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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.12

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
5c7oNADGlyceraldehyde-3-phosphate dehydrogenase, testis-specific1.2.1.121.000
4lsmNADGlyceraldehyde-3-phosphate dehydrogenase/0.580
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.564
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.557
4dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.556
4z0hNADGlyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic1.2.1.120.555
1rm4NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.547
1dc6NADGlyceraldehyde-3-phosphate dehydrogenase A/0.542
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.540
3v1yNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.534
4boyNADGlyceraldehyde-3-phosphate dehydrogenase/0.530
2d2iNAPGlyceraldehyde-3-phosphate dehydrogenase/0.525
1dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.524
1jn0NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.524
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.521
1rm5NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.520
2ep7NADGlyceraldehyde-3-phosphate dehydrogenase/0.520
3idsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.519
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.519
1hdgNADGlyceraldehyde-3-phosphate dehydrogenase/0.515
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.513
2dbvNDPGlyceraldehyde-3-phosphate dehydrogenase/0.506
3gnqNADGlyceraldehyde-3-phosphate dehydrogenase/0.504
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.502
1dssNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.501
1vc2NADGlyceraldehyde-3-phosphate dehydrogenase/0.493
1ihxSNDGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.491
3zcxNADGlyceraldehyde-3-phosphate dehydrogenase/0.490
1rm3NDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.487
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.487
1nboNADGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.477
4o63NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.476
1szjNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.475
1gadNADGlyceraldehyde-3-phosphate dehydrogenase A/0.472
1vsvNADGlyceraldehyde-3-phosphate dehydrogenase/0.466
3pymNADGlyceraldehyde-3-phosphate dehydrogenase 31.2.1.120.462
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.459
1ywgNADGlyceraldehyde-3-phosphate dehydrogenase/0.458
3l0dNADGlyceraldehyde-3-phosphate dehydrogenase/0.455
3umvFADDeoxyribodipyrimidine photo-lyase4.1.99.30.451
2b4rNADGlyceraldehyde-3-phosphate dehydrogenase/0.446