sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 5byu | COA | Thioesterase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 5byu | COA | Thioesterase | / | 1.000 | |
| 2eq6 | FAD | Dihydrolipoyl dehydrogenase | / | 0.489 | |
| 2eq8 | FAD | Dihydrolipoyl dehydrogenase | / | 0.476 | |
| 1wlv | COA | Phenylacetic acid degradation protein PaaI | / | 0.475 | |
| 3rnm | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.475 | |
| 5kl9 | COA | Acyl-CoA thioester hydrolase YbgC | 3.1.2 | 0.471 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.469 | |
| 3lad | FAD | Dihydrolipoyl dehydrogenase | / | 0.463 | |
| 5jla | NAD | Putative short-chain dehydrogenase/reductase | / | 0.462 | |
| 1e3w | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.459 | |
| 2rbe | NDP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.459 | |
| 1h7w | FAD | Dihydropyrimidine dehydrogenase [NADP(+)] | 1.3.1.2 | 0.458 | |
| 1ae1 | NAP | Tropinone reductase 1 | / | 0.455 | |
| 2gh5 | FAD | Glutathione reductase, mitochondrial | 1.8.1.7 | 0.453 | |
| 1zmc | FAD | Dihydrolipoyl dehydrogenase, mitochondrial | 1.8.1.4 | 0.452 | |
| 1sbg | IM1 | Gag-Pol polyprotein | / | 0.451 | |
| 3bhi | NAP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.450 | |
| 2dkn | NAI | 3-alpha-hydroxysteroid dehydrogenase | / | 0.449 | |
| 2qae | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.448 | |
| 3nwz | COA | BH2602 protein | / | 0.448 | |
| 3u33 | FAD | Putative acyl-CoA dehydrogenase AidB | 1.3.99 | 0.448 | |
| 1u7t | NAD | 3-hydroxyacyl-CoA dehydrogenase type-2 | 1.1.1.35 | 0.447 | |
| 2vna | NAP | Prostaglandin reductase 2 | 1.3.1.48 | 0.447 | |
| 1iy8 | NAD | Levodione reductase | / | 0.446 | |
| 3ieu | GDP | GTPase Era | / | 0.446 | |
| 4i5e | NAP | Alclohol dehydrogenase/short-chain dehydrogenase | / | 0.446 | |
| 2j3n | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.445 | |
| 4b7s | QLE | Cytochrome P450 monooxygenase PikC | / | 0.445 | |
| 4phl | PIL | Phosphodiesterase | / | 0.445 | |
| 4qec | NAP | ElxO | / | 0.445 | |
| 1zk7 | FAD | Mercuric reductase | 1.16.1.1 | 0.444 | |
| 5koi | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.444 | |
| 1gqt | ACP | Ribokinase | / | 0.443 | |
| 4jdr | FAD | Dihydrolipoyl dehydrogenase | 1.8.1.4 | 0.443 | |
| 4njs | G08 | Protease | / | 0.443 | |
| 2eq9 | FAD | Dihydrolipoyl dehydrogenase | / | 0.442 | |
| 4fw8 | NAI | 3-oxoacyl-(Acyl-carrier-protein) reductase | / | 0.442 | |
| 1h6v | FAD | Thioredoxin reductase 1, cytoplasmic | 1.8.1.9 | 0.441 | |
| 1teh | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.441 | |
| 1yb5 | NAP | Quinone oxidoreductase | 1.6.5.5 | 0.441 | |
| 3el0 | 1UN | Gag-Pol polyprotein | 3.4.23.16 | 0.441 | |
| 3qls | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 2hb7 | O1C | Vitamin D3 receptor | / | 0.440 | |
| 4g7g | VFV | Lanosterol 14-alpha-demethylase | / | 0.440 | |
| 4z3d | NDP | Carbonyl reductase [NADPH] 1 | 1.1.1.184 | 0.440 |