scPDB - Distribution of Binding site Similarity values of 4lmc entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
4lmc	C5P	Nucleoprotein

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
4lmc	C5P	Nucleoprotein	/	1.000
4kxj	P34	Nucleoprotein	/	0.657
1ry8	RUT	Aldo-keto reductase family 1 member C3	/	0.499
4a95	9MT	Glycylpeptide N-tetradecanoyltransferase	/	0.487
4fcb	0T7	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A	3.1.4.17	0.487
2a59	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.485
1w76	GNT	Acetylcholinesterase	3.1.1.7	0.481
2cf9	348	Prothrombin	3.4.21.5	0.480
1ry0	PG2	Aldo-keto reductase family 1 member C3	/	0.478
2xuj	TZ5	Acetylcholinesterase	3.1.1.7	0.476
1i5r	HYC	Estradiol 17-beta-dehydrogenase 1	1.1.1.62	0.467
3zky	WT4	Isopenicillin N synthase	1.21.3.1	0.465
4b13	X25	Glycylpeptide N-tetradecanoyltransferase	/	0.464
4bbh	YBN	Glycylpeptide N-tetradecanoyltransferase	/	0.463
4uy6	SAH	Histidine N-alpha-methyltransferase	/	0.463
1xoq	ROF	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	3.1.4.53	0.462
2cek	N8T	Acetylcholinesterase	3.1.1.7	0.461
1h22	E10	Acetylcholinesterase	3.1.1.7	0.459
2j3q	TFL	Acetylcholinesterase	3.1.1.7	0.459
3gsi	THG	Dimethylglycine oxidase	1.5.3.10	0.458
4drj	RAP	Serine/threonine-protein kinase mTOR	2.7.11.1	0.457
4drj	RAP	Peptidyl-prolyl cis-trans isomerase FKBP4	5.2.1.8	0.457
1u65	CP0	Acetylcholinesterase	3.1.1.7	0.456
2f38	15M	Aldo-keto reductase family 1 member C3	/	0.456
4e0u	0MV	Cyclic dipeptide N-prenyltransferase	/	0.456
4ey7	E20	Acetylcholinesterase	3.1.1.7	0.456
4b4w	9L9	Bifunctional protein FolD	/	0.455
4n9q	FMN	FMN-dependent NADH-azoreductase 1	/	0.455
1blz	ACV	Isopenicillin N synthase	1.21.3.1	0.454
4hf4	15H	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A	3.1.4.17	0.454
4kbz	1QA	Egl nine homolog 1	/	0.454
2xug	TZ4	Acetylcholinesterase	3.1.1.7	0.453
3f3y	4OA	Bile salt sulfotransferase	2.8.2.14	0.453
3g4i	D71	cAMP-specific 3',5'-cyclic phosphodiesterase 4D	3.1.4.53	0.453
4a16	H34	Acetylcholinesterase	3.1.1.7	0.453
1udt	VIA	cGMP-specific 3',5'-cyclic phosphodiesterase	/	0.451
3kmy	D8Y	Beta-secretase 1	3.4.23.46	0.451
4b11	7I1	Glycylpeptide N-tetradecanoyltransferase	/	0.451
3zoi	M2W	Isopenicillin N synthase	1.21.3.1	0.450
4ddl	0JQ	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A	3.1.4.17	0.450
2cf8	ESH	Prothrombin	3.4.21.5	0.449
3uzz	TES	3-oxo-5-beta-steroid 4-dehydrogenase	/	0.449
4fam	0SZ	Aldo-keto reductase family 1 member C3	/	0.449
1re0	AFB	ADP-ribosylation factor 1	/	0.448
1re0	AFB	ARF guanine-nucleotide exchange factor 1	/	0.448
2xuo	TZ4	Acetylcholinesterase	3.1.1.7	0.448
3fkt	SII	Beta-secretase 1	3.4.23.46	0.448
3g49	3G4	Corticosteroid 11-beta-dehydrogenase isozyme 1	1.1.1.146	0.448
3uzz	ASD	3-oxo-5-beta-steroid 4-dehydrogenase	/	0.448
4drh	RAP	Serine/threonine-protein kinase mTOR	2.7.11.1	0.448
4drh	RAP	Peptidyl-prolyl cis-trans isomerase FKBP5	5.2.1.8	0.448
1fds	EST	Estradiol 17-beta-dehydrogenase 1	1.1.1.62	0.447
2wu4	HBP	Acetylcholinesterase	3.1.1.7	0.447
2xuq	TZ4	Acetylcholinesterase	3.1.1.7	0.447
3pqb	VGP	Putative oxidoreductase	/	0.447
4bfw	ZVW	Pantothenate kinase	2.7.1.33	0.447
4f1l	0RY	Poly [ADP-ribose] polymerase 14	2.4.2.30	0.447
4jt8	1NR	NAD-dependent protein deacetylase sirtuin-3, mitochondrial	3.5.1	0.447
4xzj	NAD	Putative NAD(+)--arginine ADP-ribosyltransferase Vis	2.4.2.31	0.447
2jf0	HBP	Acetylcholinesterase	3.1.1.7	0.446
3tfu	PL8	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	2.6.1.62	0.446
3wav	DWV	Ectonucleotide pyrophosphatase/phosphodiesterase family member 2	3.1.4.39	0.446
1c4u	IH1	Prothrombin	3.4.21.5	0.445
1odc	A8B	Acetylcholinesterase	3.1.1.7	0.444
1wkh	PPE	[LysW]-aminoadipate semialdehyde transaminase	/	0.444
1zgc	A2E	Acetylcholinesterase	3.1.1.7	0.444
2ovv	PFH	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A	3.1.4.17	0.444
2xup	TZ5	Acetylcholinesterase	3.1.1.7	0.444
2zhe	13U	Prothrombin	3.4.21.5	0.444
4bfu	ZVU	Pantothenate kinase	2.7.1.33	0.444
1wkg	POI	[LysW]-aminoadipate semialdehyde transaminase	/	0.443
2pdm	ZST	Aldose reductase	1.1.1.21	0.443
4dbw	511	Aldo-keto reductase family 1 member C3	/	0.443
4hcy	0YN	Transketolase	/	0.443
1o6q	R17	Squalene--hopene cyclase	4.2.1.129	0.442
1q0r	AKT	Aclacinomycin methylesterase RdmC	3.1.1.95	0.442
1r58	AO5	Methionine aminopeptidase 2	/	0.442
1tkb	N1T	Transketolase 1	2.2.1.1	0.442
2wo7	ASV	Isopenicillin N synthase	1.21.3.1	0.442
3b8x	G4M	Putative pyridoxamine 5-phosphate-dependent dehydrase	/	0.442
3bur	TES	3-oxo-5-beta-steroid 4-dehydrogenase	/	0.442
1pj6	FOL	Dimethylglycine oxidase	1.5.3.10	0.441
1ypm	RA4	Prothrombin	3.4.21.5	0.441
2a57	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.441
2am2	2LG	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	/	0.441
2xuf	TZ4	Acetylcholinesterase	3.1.1.7	0.441
4bfz	ZVZ	Pantothenate kinase	2.7.1.33	0.441
4g2l	0WL	High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A	/	0.441
2y04	68H	Beta-1 adrenergic receptor	/	0.441
4ami	G90	Beta-1 adrenergic receptor	/	0.441
3pbl	ETQ	D(3) dopamine receptor	/	0.441
1fml	RTL	Retinol dehydratase	/	0.440
2ovy	PFJ	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A	3.1.4.17	0.440
2v3o	I26	Prothrombin	3.4.21.5	0.440
3sfh	1DI	Histone deacetylase 8	3.5.1.98	0.440
3u5y	SCG	Raucaffricine-O-beta-D-glucosidase	3.2.1.125	0.440
4s0v	SUV	Orexin receptor type 2	/	0.440