Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4ki0ANPMaltose/maltodextrin import ATP-binding protein MalK

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
4ki0ANPMaltose/maltodextrin import ATP-binding protein MalK/1.000
3tifADPUncharacterized ABC transporter ATP-binding protein MJ0796/0.494
2fgjATPAlpha-hemolysin translocation ATP-binding protein HlyB/0.482
1q12ATPMaltose/maltodextrin import ATP-binding protein MalK/0.473
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.453
1l2tATPUncharacterized ABC transporter ATP-binding protein MJ0796/0.451
3vx4ATPPutative ABC transporter, ATP-binding protein ComA/0.443