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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4kc1WS1Histo-blood group ABO system transferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4kc1WS1Histo-blood group ABO system transferase/1.000
4kc2WS2Histo-blood group ABO system transferase/0.802
4kc4WS3Histo-blood group ABO system transferase/0.739
3v0m5GWHisto-blood group ABO system transferase/0.683
5c1gGDUHisto-blood group ABO system transferase/0.650
3v0o4GWHisto-blood group ABO system transferase/0.602
3v0p4GWHisto-blood group ABO system transferase/0.602
2vfzUPFN-acetyllactosaminide alpha-1,3-galactosyltransferase/0.593
2vs5GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase/0.562
3v0n4GWHisto-blood group ABO system transferase/0.551
5c3aURMHisto-blood group ABO system transferase/0.541
1g93UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase/0.540
1g8oU5PN-acetyllactosaminide alpha-1,3-galactosyltransferase/0.528
5c1lGDUHisto-blood group ABO system transferase/0.497
5c4bUPGHisto-blood group ABO system transferase/0.489
3jszUPGUncharacterized protein/0.471
3hdqGDUUDP-galactopyranose mutase/0.468
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.462
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.461
3hdyGDUUDP-galactopyranose mutase/0.461
1kmyBPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.460
2wzgUPGUncharacterized protein/0.460
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.459
3ccc7ACDipeptidyl peptidase 4/0.459
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.458
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.455
4lv5ADPRhoptry protein 5B/0.455
4rphGDUUDP-galactopyranose mutase5.4.99.90.454
1u1gBBBUridine phosphorylase2.4.2.30.453
4a5sN7FDipeptidyl peptidase 4/0.453
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
1r6tTYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.451
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.451
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.450
3g0bT22Dipeptidyl peptidase 4/0.450
4b68NAPL-ornithine N(5)-monooxygenase/0.450
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.449
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.449
1u1d181Uridine phosphorylase2.4.2.30.448
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.448
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
3opmLUIDipeptidyl peptidase 4/0.447
3elbC5PEthanolamine-phosphate cytidylyltransferase2.7.7.140.445
3u9fCLMChloramphenicol acetyltransferase2.3.1.280.445
1vbiNADMalate/L-lactate dehydrogenase family protein/0.443
3pqbVGPPutative oxidoreductase/0.443
4nesUD1UDP-N-acetylglucosamine 2-epimerase5.1.3.140.443
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3rl35GPMetallophosphoesterase MPPED23.10.440
3sn6P0GBeta-2 adrenergic receptor/0.440