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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4g1f0WGDipeptidyl peptidase 4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4g1f0WGDipeptidyl peptidase 4/1.000
3ccc7ACDipeptidyl peptidase 4/0.657
3opmLUIDipeptidyl peptidase 4/0.618
3g0gRUMDipeptidyl peptidase 4/0.612
4a5sN7FDipeptidyl peptidase 4/0.605
2rgu356Dipeptidyl peptidase 4/0.602
3g0bT22Dipeptidyl peptidase 4/0.589
3qbjNXZDipeptidyl peptidase 4/0.561
2aj8SC3Dipeptidyl peptidase 4/0.554
3f8sPF2Dipeptidyl peptidase 4/0.553
3g0dXIHDipeptidyl peptidase 4/0.535
4ffw715Dipeptidyl peptidase 4/0.522
3vjkM51Dipeptidyl peptidase 4/0.496
3ccbB2YDipeptidyl peptidase 4/0.483
4jt91NSNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.460
3vjlW94Dipeptidyl peptidase 4/0.457
5ah5LSSLeucine--tRNA ligase/0.454
4hmz18TdTDP-4-dehydro-6-deoxyglucose 3-epimerase5.1.3.270.445
3b6pTMPThree-prime repair exonuclease 13.1.11.20.443
2oaeAILDipeptidyl peptidase 4/0.442
3qgf46FGenome polyprotein2.7.7.480.442