2.900 Å
X-ray
2012-06-01
| Name: | Dipeptidyl peptidase 4 |
|---|---|
| ID: | DPP4_RAT |
| AC: | P14740 |
| Organism: | Rattus norvegicus |
| Reign: | Eukaryota |
| TaxID: | 10116 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 54.094 |
|---|---|
| Number of residues: | 32 |
| Including | |
| Standard Amino Acids: | 32 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.107 | 344.250 |
| % Hydrophobic | % Polar |
|---|---|
| 34.31 | 65.69 |
| According to VolSite | |

| HET Code: | 715 |
|---|---|
| Formula: | C16H16F6N5O |
| Molecular weight: | 408.322 g/mol |
| DrugBank ID: | DB01261 |
| Buried Surface Area: | 61.69 % |
| Polar Surface area: | 78.66 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 1 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 5 |
| X | Y | Z |
|---|---|---|
| 20.7057 | -9.221 | 53.5259 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| N20 | OE2 | GLU- 203 | 3.13 | 173.22 | H-Bond (Ligand Donor) |
| N20 | OE2 | GLU- 203 | 3.13 | 0 | Ionic (Ligand Cationic) |
| N20 | OE2 | GLU- 204 | 2.7 | 125.5 | H-Bond (Ligand Donor) |
| N20 | OE1 | GLU- 204 | 2.99 | 168.04 | H-Bond (Ligand Donor) |
| N20 | OE2 | GLU- 204 | 2.7 | 0 | Ionic (Ligand Cationic) |
| N20 | OE1 | GLU- 204 | 2.99 | 0 | Ionic (Ligand Cationic) |
| F45 | CD | ARG- 356 | 3.78 | 0 | Hydrophobic |
| F46 | CB | SER- 631 | 4.3 | 0 | Hydrophobic |
| C5 | CB | TYR- 632 | 4.41 | 0 | Hydrophobic |
| F9 | CD2 | TYR- 632 | 3.41 | 0 | Hydrophobic |
| F9 | CG2 | VAL- 657 | 4.42 | 0 | Hydrophobic |
| F46 | CG2 | VAL- 657 | 3.23 | 0 | Hydrophobic |
| F9 | CH2 | TRP- 660 | 4.3 | 0 | Hydrophobic |
| N20 | OH | TYR- 663 | 2.97 | 150.1 | H-Bond (Ligand Donor) |
| F46 | CE1 | TYR- 663 | 3.79 | 0 | Hydrophobic |
| F9 | CE1 | TYR- 667 | 3.66 | 0 | Hydrophobic |
| C15 | CD2 | TYR- 667 | 4.44 | 0 | Hydrophobic |
| F46 | CB | VAL- 712 | 4.46 | 0 | Hydrophobic |
| C1 | CG2 | VAL- 712 | 3.72 | 0 | Hydrophobic |