2.900 Å
X-ray
2012-06-01
Name: | Dipeptidyl peptidase 4 |
---|---|
ID: | DPP4_RAT |
AC: | P14740 |
Organism: | Rattus norvegicus |
Reign: | Eukaryota |
TaxID: | 10116 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 54.094 |
---|---|
Number of residues: | 32 |
Including | |
Standard Amino Acids: | 32 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.107 | 344.250 |
% Hydrophobic | % Polar |
---|---|
34.31 | 65.69 |
According to VolSite |
HET Code: | 715 |
---|---|
Formula: | C16H16F6N5O |
Molecular weight: | 408.322 g/mol |
DrugBank ID: | DB01261 |
Buried Surface Area: | 61.69 % |
Polar Surface area: | 78.66 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 1 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
20.7057 | -9.221 | 53.5259 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N20 | OE2 | GLU- 203 | 3.13 | 173.22 | H-Bond (Ligand Donor) |
N20 | OE2 | GLU- 203 | 3.13 | 0 | Ionic (Ligand Cationic) |
N20 | OE2 | GLU- 204 | 2.7 | 125.5 | H-Bond (Ligand Donor) |
N20 | OE1 | GLU- 204 | 2.99 | 168.04 | H-Bond (Ligand Donor) |
N20 | OE2 | GLU- 204 | 2.7 | 0 | Ionic (Ligand Cationic) |
N20 | OE1 | GLU- 204 | 2.99 | 0 | Ionic (Ligand Cationic) |
F45 | CD | ARG- 356 | 3.78 | 0 | Hydrophobic |
F46 | CB | SER- 631 | 4.3 | 0 | Hydrophobic |
C5 | CB | TYR- 632 | 4.41 | 0 | Hydrophobic |
F9 | CD2 | TYR- 632 | 3.41 | 0 | Hydrophobic |
F9 | CG2 | VAL- 657 | 4.42 | 0 | Hydrophobic |
F46 | CG2 | VAL- 657 | 3.23 | 0 | Hydrophobic |
F9 | CH2 | TRP- 660 | 4.3 | 0 | Hydrophobic |
N20 | OH | TYR- 663 | 2.97 | 150.1 | H-Bond (Ligand Donor) |
F46 | CE1 | TYR- 663 | 3.79 | 0 | Hydrophobic |
F9 | CE1 | TYR- 667 | 3.66 | 0 | Hydrophobic |
C15 | CD2 | TYR- 667 | 4.44 | 0 | Hydrophobic |
F46 | CB | VAL- 712 | 4.46 | 0 | Hydrophobic |
C1 | CG2 | VAL- 712 | 3.72 | 0 | Hydrophobic |