Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ffw 715 Dipeptidyl peptidase 4

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ffw 715Dipeptidyl peptidase 4 / 0.989
4dtc D5CDipeptidyl peptidase 4 / 0.837
3vjk M51Dipeptidyl peptidase 4 / 0.764
3vjl W94Dipeptidyl peptidase 4 / 0.754
4a5s N7FDipeptidyl peptidase 4 / 0.714
3ccb B2YDipeptidyl peptidase 4 / 0.709
3opm LUIDipeptidyl peptidase 4 / 0.706
2rgu 356Dipeptidyl peptidase 4 / 0.697
3qbj NXZDipeptidyl peptidase 4 / 0.681
3ccc 7ACDipeptidyl peptidase 4 / 0.660
2oae AILDipeptidyl peptidase 4 / 0.659
3vsx R32Renin 3.4.23.15 0.651