sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4cb4 | MGT | Polymerase basic protein 2 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 4cb4 | MGT | Polymerase basic protein 2 | / | 1.000 | |
| 2vqz | MGT | Polymerase basic protein 2 | / | 0.603 | |
| 4cb5 | 93G | Polymerase basic protein 2 | / | 0.588 | |
| 5fmm | MGT | Polymerase basic protein 2 | / | 0.584 | |
| 4nce | MGT | Polymerase basic protein 2 | / | 0.576 | |
| 4cb6 | 29R | Polymerase basic protein 2 | / | 0.538 | |
| 4eqk | MGT | Polymerase basic protein 2 | / | 0.533 | |
| 4es5 | MGT | Polymerase basic protein 2 | / | 0.499 | |
| 1u65 | CP0 | Acetylcholinesterase | 3.1.1.7 | 0.479 | |
| 4cb7 | 41G | Polymerase basic protein 2 | / | 0.478 | |
| 1ry8 | RUT | Aldo-keto reductase family 1 member C3 | / | 0.467 | |
| 1zgb | A1E | Acetylcholinesterase | 3.1.1.7 | 0.465 | |
| 1w76 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.464 | |
| 1ut6 | A8N | Acetylcholinesterase | 3.1.1.7 | 0.459 | |
| 3zv7 | NHG | Acetylcholinesterase | 3.1.1.7 | 0.459 | |
| 1w6r | GNT | Acetylcholinesterase | 3.1.1.7 | 0.458 | |
| 2xui | TZ5 | Acetylcholinesterase | 3.1.1.7 | 0.458 | |
| 2cek | N8T | Acetylcholinesterase | 3.1.1.7 | 0.456 | |
| 1oj4 | CDM | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | 2.7.1.148 | 0.455 | |
| 1dx6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.453 | |
| 4ey6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.453 | |
| 1vot | HUP | Acetylcholinesterase | 3.1.1.7 | 0.452 | |
| 3ug8 | IMN | Aldo-keto reductase family 1 member C3 | / | 0.451 | |
| 4a16 | H34 | Acetylcholinesterase | 3.1.1.7 | 0.451 | |
| 1qti | GNT | Acetylcholinesterase | 3.1.1.7 | 0.447 | |
| 1w6j | R71 | Lanosterol synthase | 5.4.99.7 | 0.446 | |
| 3b8x | G4M | Putative pyridoxamine 5-phosphate-dependent dehydrase | / | 0.446 | |
| 2ckm | AA7 | Acetylcholinesterase | 3.1.1.7 | 0.443 | |
| 2qim | ZEA | Class 10 plant pathogenesis-related protein | / | 0.440 |