1.500 Å
X-ray
2013-10-10
Name: | Polymerase basic protein 2 |
---|---|
ID: | Q2LG68_9INFA |
AC: | Q2LG68 |
Organism: | Influenza A virus ) |
Reign: | Viruses |
TaxID: | 365107 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 14.242 |
---|---|
Number of residues: | 24 |
Including | |
Standard Amino Acids: | 23 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 1 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.428 | 364.500 |
% Hydrophobic | % Polar |
---|---|
56.48 | 43.52 |
According to VolSite |
HET Code: | 93G |
---|---|
Formula: | C15H15N6O4 |
Molecular weight: | 343.317 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 48.02 % |
Polar Surface area: | 156.67 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
-50.002 | 4.4756 | -3.13928 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C1' | CE1 | PHE- 323 | 3.66 | 0 | Hydrophobic |
CG | CD1 | PHE- 323 | 3.34 | 0 | Hydrophobic |
CD1 | CB | PHE- 323 | 4.07 | 0 | Hydrophobic |
CZ | CB | PHE- 323 | 3.9 | 0 | Hydrophobic |
DuAr | DuAr | HIS- 357 | 3.36 | 0 | Aromatic Face/Face |
N1 | OE1 | GLU- 361 | 2.66 | 178.93 | H-Bond (Ligand Donor) |
N2 | OE2 | GLU- 361 | 2.79 | 173.11 | H-Bond (Ligand Donor) |
O6 | NZ | LYS- 376 | 2.82 | 163.8 | H-Bond (Protein Donor) |