1.500 Å
X-ray
2013-10-10
| Name: | Polymerase basic protein 2 |
|---|---|
| ID: | Q2LG68_9INFA |
| AC: | Q2LG68 |
| Organism: | Influenza A virus ) |
| Reign: | Viruses |
| TaxID: | 365107 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 14.242 |
|---|---|
| Number of residues: | 24 |
| Including | |
| Standard Amino Acids: | 23 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.428 | 364.500 |
| % Hydrophobic | % Polar |
|---|---|
| 56.48 | 43.52 |
| According to VolSite | |

| HET Code: | 93G |
|---|---|
| Formula: | C15H15N6O4 |
| Molecular weight: | 343.317 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 48.02 % |
| Polar Surface area: | 156.67 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -50.002 | 4.4756 | -3.13928 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C1' | CE1 | PHE- 323 | 3.66 | 0 | Hydrophobic |
| CG | CD1 | PHE- 323 | 3.34 | 0 | Hydrophobic |
| CD1 | CB | PHE- 323 | 4.07 | 0 | Hydrophobic |
| CZ | CB | PHE- 323 | 3.9 | 0 | Hydrophobic |
| DuAr | DuAr | HIS- 357 | 3.36 | 0 | Aromatic Face/Face |
| N1 | OE1 | GLU- 361 | 2.66 | 178.93 | H-Bond (Ligand Donor) |
| N2 | OE2 | GLU- 361 | 2.79 | 173.11 | H-Bond (Ligand Donor) |
| O6 | NZ | LYS- 376 | 2.82 | 163.8 | H-Bond (Protein Donor) |