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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3pgqGY3Acetyl-CoA carboxylase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3pgqGY3Acetyl-CoA carboxylase/1.000
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.465
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.461
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.460
1xnyBTNPropionyl-CoA carboxylase complex B subunit/0.458
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.457
1kkq471Peroxisome proliferator-activated receptor alpha/0.457
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.456
3cylVITBasic phospholipase A2 homolog piratoxin-2/0.456
4g3jVNTLanosterol 14-alpha-demethylase/0.455
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.454
4g7gVFVLanosterol 14-alpha-demethylase/0.454
2znnS44Peroxisome proliferator-activated receptor alpha/0.451
2yyiFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.450
3zuyTCHTransporter/0.450
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.447
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.447
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
2yylFAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component1.14.14.90.445
2uxoTACHTH-type transcriptional regulator TtgR/0.444
3gw9VNILanosterol 14-alpha-demethylase/0.442
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.441
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.440