2.200 Å
X-ray
2004-10-05
| Name: | Propionyl-CoA carboxylase complex B subunit |
|---|---|
| ID: | Q9X4K7_STRCH |
| AC: | Q9X4K7 |
| Organism: | Streptomyces coelicolor |
| Reign: | Bacteria |
| TaxID: | 1902 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 29 % |
| B | 71 % |
| B-Factor: | 36.682 |
|---|---|
| Number of residues: | 46 |
| Including | |
| Standard Amino Acids: | 42 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 3 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.326 | 857.250 |
| % Hydrophobic | % Polar |
|---|---|
| 44.49 | 55.51 |
| According to VolSite | |

| HET Code: | 191 |
|---|---|
| Formula: | C24H37N7O17P3S |
| Molecular weight: | 820.574 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 47.51 % |
| Polar Surface area: | 431.53 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 21 |
| H-Bond Donors: | 6 |
| Rings: | 3 |
| Aromatic rings: | 2 |
| Anionic atoms: | 4 |
| Cationic atoms: | 1 |
| Rule of Five Violation: | 3 |
| Rotatable Bonds: | 21 |
| X | Y | Z |
|---|---|---|
| 47.1712 | -112.727 | -123.115 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O14 | ND2 | ASN- 80 | 2.89 | 128.4 | H-Bond (Protein Donor) |
| C16 | CD1 | PHE- 109 | 4.26 | 0 | Hydrophobic |
| C3 | CB | ALA- 144 | 3.57 | 0 | Hydrophobic |
| N6 | NE2 | GLN- 147 | 3.37 | 154.1 | H-Bond (Protein Donor) |
| C | CD2 | LEU- 153 | 3.46 | 0 | Hydrophobic |
| C | CD2 | TYR- 156 | 3.73 | 0 | Hydrophobic |
| O | N | GLY- 183 | 3.38 | 126.73 | H-Bond (Protein Donor) |
| C3 | CG1 | VAL- 444 | 3.95 | 0 | Hydrophobic |
| C11 | CD1 | ILE- 453 | 4.33 | 0 | Hydrophobic |
| C12 | CG2 | ILE- 453 | 3.39 | 0 | Hydrophobic |
| O5 | CZ | ARG- 456 | 2.94 | 0 | Ionic (Protein Cationic) |
| O6 | CZ | ARG- 456 | 3.53 | 0 | Ionic (Protein Cationic) |
| O15 | O | HOH- 9812 | 2.98 | 179.99 | H-Bond (Protein Donor) |