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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3oixFMNDihydroorotate dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3oixFMNDihydroorotate dehydrogenase/1.000
4ef8FMNDihydroorotate dehydrogenase (fumarate)/0.607
4wzhFMNDihydroorotate dehydrogenase (fumarate)/0.605
3gyeFMNDihydroorotate dehydrogenase (fumarate)/0.590
2djxFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.542
4ef9FMNDihydroorotate dehydrogenase (fumarate)/0.529
2djlFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.519
3c3nFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.511
2bslFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.510
1jueFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.498
1ep3FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit1.3.1.140.487
1dorFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.476
4eb5PLPCysteine desulfurase IscS 2/0.469
1ep1FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit1.3.1.140.465
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.464
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.456
4djaFAD(6-4) photolyase/0.451
3f63GTXGlutathione transferase GST1-4/0.450
3tjzGNPADP-ribosylation factor 1/0.450
4df2FMNNADPH dehydrogenase/0.450
4ambDUDPutative glycosyl transferase/0.449
4eb7PLPCysteine desulfurase IscS 2/0.448
1h63FMNPentaerythritol tetranitrate reductase/0.447
1lf2R37Plasmepsin-23.4.23.390.447
1xe55FEPlasmepsin-23.4.23.390.445
3gqvNAPEnoyl reductase LovC10.445
3s1dZIRCytokinin dehydrogenase 11.5.99.120.445
4g74FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.445
4m5pFMNNADPH dehydrogenase/0.444
4bbyFADAlkyldihydroxyacetonephosphate synthase, peroxisomal2.5.1.260.442
1h50FMNPentaerythritol tetranitrate reductase/0.441
2qimZEAClass 10 plant pathogenesis-related protein/0.440
4bfxZVXPantothenate kinase2.7.1.330.440