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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3nynSGVG protein-coupled receptor kinase 62.7.11.16

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3nynSGVG protein-coupled receptor kinase 62.7.11.161.000
1aq1STUCyclin-dependent kinase 22.7.11.220.505
5cnoANPEpidermal growth factor receptor2.7.10.10.496
1g5sI17Cyclin-dependent kinase 22.7.11.220.492
1y91CT9Cyclin-dependent kinase 22.7.11.220.491
3sheI85MAP kinase-activated protein kinase 32.7.11.10.486
4bibIEOMitogen-activated protein kinase kinase kinase 52.7.11.250.484
2vz6FEFCalcium/calmodulin-dependent protein kinase type II subunit alpha2.7.11.170.483
3bu5ATPInsulin receptor2.7.10.10.483
1xjdSTUProtein kinase C theta type2.7.11.130.482
1pxlCK4Cyclin-dependent kinase 22.7.11.220.477
4fv6E57Mitogen-activated protein kinase 12.7.11.240.476
2r3jSCJCyclin-dependent kinase 22.7.11.220.475
3lfqA28Cyclin-dependent kinase 22.7.11.220.474
1oirHDYCyclin-dependent kinase 22.7.11.220.473
2vthLZ2Cyclin-dependent kinase 22.7.11.220.466
1pxmCK5Cyclin-dependent kinase 22.7.11.220.465
2a0cCK9Cyclin-dependent kinase 22.7.11.220.463
2r64740Cyclin-dependent kinase 22.7.11.220.462
1e1xNW1Cyclin-dependent kinase 22.7.11.220.460
1ke7LS3Cyclin-dependent kinase 22.7.11.220.459
4nifANPMitogen-activated protein kinase 12.7.11.240.458
1oitHDTCyclin-dependent kinase 22.7.11.220.457
3w551FMMitogen-activated protein kinase 12.7.11.240.457
1ykr628Cyclin-dependent kinase 22.7.11.220.455
2b53D23Cyclin-dependent kinase 22.7.11.220.455
2pvlP55Casein kinase II subunit alpha2.7.11.10.455
2w05FRTCyclin-dependent kinase 22.7.11.220.455
3gubGUBDeath-associated protein kinase 12.7.11.10.455
4ek816KCyclin-dependent kinase 22.7.11.220.455
2r3iSCFCyclin-dependent kinase 22.7.11.220.454
4o0wADNAurora kinase A2.7.11.10.454
5cnnANPEpidermal growth factor receptor2.7.10.10.454
1gih1PUCyclin-dependent kinase 22.7.11.220.453
1m2pHNACasein kinase II subunit alpha2.7.11.10.451
3r2b05BMAP kinase-activated protein kinase 22.7.11.10.451
3lfnA27Cyclin-dependent kinase 22.7.11.220.450
1w8cN69Cyclin-dependent kinase 22.7.11.220.448
2phkATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform2.7.11.190.448
2a4lRRCCyclin-dependent kinase 22.7.11.220.447
3rk708ZCyclin-dependent kinase 22.7.11.220.447
4ic7ANPMitogen-activated protein kinase 72.7.11.240.447
1pxpCK8Cyclin-dependent kinase 22.7.11.220.446
3le62BZCyclin-dependent kinase 22.7.11.220.446
1eh4IC1Casein kinase I homolog 12.7.11.10.445
1pyePM1Cyclin-dependent kinase 22.7.11.220.445
4gih0X5Non-receptor tyrosine-protein kinase TYK22.7.10.20.445
2c6o4SPCyclin-dependent kinase 22.7.11.220.444
2pvhP19Casein kinase II subunit alpha2.7.11.10.444
2uzlC94Cyclin-dependent kinase 22.7.11.220.444
3s2pPMUCyclin-dependent kinase 22.7.11.220.444
4h3qANPMitogen-activated protein kinase 12.7.11.240.444
2gcdSTUSerine/threonine-protein kinase TAO22.7.11.10.443
2vv9IM9Cyclin-dependent kinase 22.7.11.220.443
3ezrEZRCyclin-dependent kinase 22.7.11.220.443
3rni21ZCyclin-dependent kinase 22.7.11.220.443
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.442
1gii1PUCyclin-dependent kinase 22.7.11.220.441
1h1s4SPCyclin-dependent kinase 22.7.11.220.441
3c50ADPRhodopsin kinase/0.441
3s1h56ZCyclin-dependent kinase 22.7.11.220.441
3sayOFTGlycogen synthase kinase-3 beta2.7.11.260.441
4bgh3I6Cyclin-dependent kinase 22.7.11.220.441
4eon1ROCyclin-dependent kinase 22.7.11.220.441
1h1q2A6Cyclin-dependent kinase 22.7.11.220.440
4hge15VTyrosine-protein kinase JAK2/0.440