scPDB - 4fv6 entry

Protein Data Bank Entry:

PDB ID : 4fv6

Resolution :2.500 Å

Experimental Method : X-ray

Deposition Date : 2012-06-29

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Mitogen-activated protein kinase 1
ID:	MK01_HUMAN
AC:	P28482
Organism:	Homo sapiens
Reign:	Eukaryota
TaxID:	9606
EC Number:	2.7.11.24

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	25.911
Number of residues:	38
Including
Standard Amino Acids:	37
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.692	810.000

% Hydrophobic	% Polar
40.42	59.58
According to VolSite

Ligand :

HET Code:	E57
Formula:	C22H26ClN5O3
Molecular weight:	443.927 g/mol
DrugBank ID:	-
Buried Surface Area:	68.54 %
Polar Surface area:	123.16 Å2

Number of
H-Bond Acceptors:	6
H-Bond Donors:	5
Rings:	3
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	0
Rotatable Bonds:	9

Mass center Coordinates

X	Y	Z
8.58616	-3.6179	-15.2731

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C18	CD1	ILE- 29	4.37	0	Hydrophobic	false
C20	CG2	ILE- 29	3.86	0	Hydrophobic	false
CL	CE2	TYR- 34	3.42	0	Hydrophobic	false
C4	CG2	VAL- 37	3.4	0	Hydrophobic	false
C16	CB	ALA- 50	3.76	0	Hydrophobic	false
O1	NZ	LYS- 52	2.88	157.21	H-Bond (Protein Donor)	false
C5	CG	LYS- 52	3.99	0	Hydrophobic	false
CL	CG2	ILE- 54	3.61	0	Hydrophobic	false
C6	CG2	ILE- 54	3.6	0	Hydrophobic	false
C17	CG1	ILE- 82	4.22	0	Hydrophobic	false
C17	CB	GLN- 103	4.05	0	Hydrophobic	false
N4	N	MET- 106	3.09	161.74	H-Bond (Protein Donor)	false
N5	O	MET- 106	3.27	170.66	H-Bond (Ligand Donor)	false
C21	CB	ASP- 109	4.11	0	Hydrophobic	false
O2	OD2	ASP- 109	2.69	159.8	H-Bond (Ligand Donor)	false
C21	CD2	LEU- 154	3.73	0	Hydrophobic	false
C16	CD1	LEU- 154	3.46	0	Hydrophobic	false
O3	OD2	ASP- 165	2.79	151.58	H-Bond (Ligand Donor)	false
O1	O	HOH- 539	3.02	179.98	H-Bond (Protein Donor)	false