scPDB - 1m2p entry

Protein Data Bank Entry:

PDB ID : 1m2p

Resolution :2.000 Å

Experimental Method : X-ray

Deposition Date : 2002-06-25

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Casein kinase II subunit alpha
ID:	CSK2A_MAIZE
AC:	P28523
Organism:	Zea mays
Reign:	Eukaryota
TaxID:	4577
EC Number:	2.7.11.1

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	28.374
Number of residues:	30
Including
Standard Amino Acids:	29
Non Standard Amino Acids:	0
Water Molecules:	1
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.591	870.750

% Hydrophobic	% Polar
41.09	58.91
According to VolSite

Ligand :

HET Code:	HNA
Formula:	C14H5NO6
Molecular weight:	283.193 g/mol
DrugBank ID:	DB03035
Buried Surface Area:	61.19 %
Polar Surface area:	126.08 Å2

Number of
H-Bond Acceptors:	6
H-Bond Donors:	0
Rings:	3
Aromatic rings:	2
Anionic atoms:	3
Cationic atoms:	1
Rule of Five Violation:	0
Rotatable Bonds:	1

Mass center Coordinates

X	Y	Z
23.9543	5.78719	18.0694

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
C14	CG1	VAL- 53	4.14	0	Hydrophobic	false
C15	CG2	VAL- 53	4.46	0	Hydrophobic	false
C2	CG2	VAL- 53	3.53	0	Hydrophobic	false
C25	CG2	ILE- 66	3.94	0	Hydrophobic	false
O22	NZ	LYS- 68	2.81	158.21	H-Bond (Protein Donor)	false
C22	CD	LYS- 68	3.94	0	Hydrophobic	false
C24	CG2	VAL- 95	3.67	0	Hydrophobic	false
C24	CB	PHE- 113	4.47	0	Hydrophobic	false
C3	CD1	ILE- 174	3.82	0	Hydrophobic	false
C14	CD1	ILE- 174	3.63	0	Hydrophobic	false
C22	CB	ILE- 174	3.97	0	Hydrophobic	false
C24	CG2	ILE- 174	3.89	0	Hydrophobic	false
O22	N	ASP- 175	3.24	129.81	H-Bond (Protein Donor)	false
O22	O	HOH- 364	2.93	145.44	H-Bond (Ligand Donor)	false