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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3jzfJZKBiotin carboxylase6.3.4.14

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3jzfJZKBiotin carboxylase6.3.4.141.000
2v5aLZLBiotin carboxylase6.3.4.140.565
3jziJZLBiotin carboxylase6.3.4.140.559
4mv1ADPBiotin carboxylase6.3.4.140.497
4mv8ACPBiotin carboxylase6.3.4.140.491
2v58LZJBiotin carboxylase6.3.4.140.487
2v59LZKBiotin carboxylase6.3.4.140.487
2w6pOA4Biotin carboxylase6.3.4.140.487
4mv4ACPBiotin carboxylase6.3.4.140.477
2w6oOA3Biotin carboxylase6.3.4.140.465
2w6qOA5Biotin carboxylase6.3.4.140.456
2w71L23Biotin carboxylase6.3.4.140.443
2j9gANPBiotin carboxylase6.3.4.140.441
2po7CHDFerrochelatase, mitochondrial4.99.1.10.441