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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ivcFG4Pantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ivcFG4Pantothenate synthetase6.3.2.11.000
1n2hPAJPantothenate synthetase6.3.2.10.519
3isjA8DPantothenate synthetase6.3.2.10.511
3ioeA7DPantothenate synthetase6.3.2.10.495
3iocA5DPantothenate synthetase6.3.2.10.488
3ivgFG5Pantothenate synthetase6.3.2.10.484
2a84ATPPantothenate synthetase6.3.2.10.481
3ivxFG6Pantothenate synthetase6.3.2.10.478
5kwvANPPantothenate synthetase/0.473
1n2iPAJPantothenate synthetase6.3.2.10.472
4ddhMS0Pantothenate synthetase6.3.2.10.470
5hg0SAMPantothenate synthetase/0.469
1n2gAPCPantothenate synthetase6.3.2.10.461
3ag6PAJPantothenate synthetase/0.459
3imeBZ2Pantothenate synthetase6.3.2.10.457
3cow52HPantothenate synthetase6.3.2.10.451
3iobA4DPantothenate synthetase6.3.2.10.450
3imgBZ2Pantothenate synthetase6.3.2.10.448
2x3fAPCPantothenate synthetase/0.446
3coz54HPantothenate synthetase6.3.2.10.440