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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3cvkN34Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3cvkN34Genome polyprotein2.7.7.481.000
3gnwXNCGenome polyprotein2.7.7.480.661
3d28B34Genome polyprotein2.7.7.480.657
3h5sH5SGenome polyprotein2.7.7.480.639
3bsa1PDGenome polyprotein2.7.7.480.634
3d5m4MSGenome polyprotein2.7.7.480.630
3h5uH5UGenome polyprotein2.7.7.480.623
3tyvHI3Genome polyprotein2.7.7.480.617
1z4uPH9Polyprotein/0.609
4ih71ERGenome polyprotein2.7.7.480.608
3h2lYAKGenome polyprotein2.7.7.480.601
3upi0C2Genome polyprotein2.7.7.480.599
2gc8885Polyprotein/0.592
3ska053Genome polyprotein2.7.7.480.591
4ih61EPGenome polyprotein2.7.7.480.589
3ske054Genome polyprotein2.7.7.480.588
4mk728OGenome polyprotein2.7.7.480.587
2fvc888Polyprotein/0.575
3golXNDGenome polyprotein2.7.7.480.573
3cdeN3HGenome polyprotein2.7.7.480.572
4eaw0NQGenome polyprotein2.7.7.480.572
2yoj8Y6Genome polyprotein2.7.7.480.571
4mk828QGenome polyprotein2.7.7.480.571
3hkyIX6Genome polyprotein2.7.7.480.570
3gnvXNZGenome polyprotein2.7.7.480.569
3csoXNIGenome polyprotein2.7.7.480.566
4mk928RGenome polyprotein2.7.7.480.564
3cwj321Genome polyprotein2.7.7.480.546
4mkb28VGenome polyprotein2.7.7.480.545
3e51N35Genome polyprotein2.7.7.480.539
4iz02BIGenome polyprotein2.7.7.480.537
3co93MSGenome polyprotein2.7.7.480.534
1yvfPH7Polyprotein/0.527
3h98B5PGenome polyprotein2.7.7.480.512
2qe5617Polyprotein/0.480
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.469
2zevIPEGeranylgeranyl pyrophosphate synthase/0.453
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.451
2ym1FADPhenylacetone monooxygenase1.14.13.920.449
1szgFNSCytochrome b2, mitochondrial1.1.2.30.447
2xlrFADPutative flavin-containing monooxygenase/0.445
1x1dSAHC-20 methyltransferase/0.443
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.442
4rvgTYDD-mycarose 3-C-methyltransferase/0.442
1x1cSAHC-20 methyltransferase/0.441
2uxoTACHTH-type transcriptional regulator TtgR/0.441
3ensENSCoagulation factor X3.4.21.60.441
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.441
4hhy15RPoly [ADP-ribose] polymerase 12.4.2.300.440