scPDB - 3cso entry

Protein Data Bank Entry:

PDB ID : 3cso

Resolution :2.710 Å

Experimental Method : X-ray

Deposition Date : 2008-04-10

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Genome polyprotein
ID:	POLG_HCVJ4
AC:	O92972
Organism:	Hepatitis C virus genotype 1b
Reign:	Viruses
TaxID:	420174
EC Number:	2.7.7.48

Chains:

Chain Name:	Percentage of Residues within binding site
B	100 %

Ligand binding site composition:

B-Factor:	32.601
Number of residues:	38
Including
Standard Amino Acids:	36
Non Standard Amino Acids:	0
Water Molecules:	2
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
0.170	799.875

% Hydrophobic	% Polar
29.54	70.46
According to VolSite

Ligand :

HET Code:	XNI
Formula:	C30H29ClN2O3
Molecular weight:	501.016 g/mol
DrugBank ID:	-
Buried Surface Area:	62.68 %
Polar Surface area:	58.64 Å2

Number of
H-Bond Acceptors:	4
H-Bond Donors:	1
Rings:	5
Aromatic rings:	3
Anionic atoms:	0
Cationic atoms:	0
Rule of Five Violation:	2
Rotatable Bonds:	4

Mass center Coordinates

X	Y	Z
25.7609	53.7578	56.4392

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
CL36	CE1	PHE- 193	4.07	0	Hydrophobic	false
C30	CB	PRO- 197	3.69	0	Hydrophobic	false
C32	CD	ARG- 200	3.63	0	Hydrophobic	false
CL36	CB	ASN- 316	4.01	0	Hydrophobic	false
C26	CB	CYS- 366	3.91	0	Hydrophobic	false
C14	CB	CYS- 366	3.66	0	Hydrophobic	false
C21	SG	CYS- 366	3.66	0	Hydrophobic	false
C23	CB	CYS- 366	3.27	0	Hydrophobic	false
C28	CB	SER- 368	3.72	0	Hydrophobic	false
C27	CD1	LEU- 384	3.79	0	Hydrophobic	false
C31	CD1	LEU- 384	3.84	0	Hydrophobic	false
C34	CB	SER- 407	4.39	0	Hydrophobic	false
C1	CG	MET- 414	4.45	0	Hydrophobic	false
C35	CG	MET- 414	3.98	0	Hydrophobic	false
C29	CB	MET- 414	4.27	0	Hydrophobic	false
C31	CE	MET- 414	3.31	0	Hydrophobic	false
C35	CE2	TYR- 415	3.88	0	Hydrophobic	false
CL36	CE1	TYR- 448	3.56	0	Hydrophobic	false
C20	CE1	TYR- 448	3.46	0	Hydrophobic	false
O33	N	TYR- 448	2.98	165.81	H-Bond (Protein Donor)	false
C19	CB	SER- 556	4.49	0	Hydrophobic	false
O18	O	HOH- 606	2.6	147.65	H-Bond (Protein Donor)	false