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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3csoXNIGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3csoXNIGenome polyprotein2.7.7.481.000
3h59H59Genome polyprotein2.7.7.480.606
3uph0C1Genome polyprotein2.7.7.480.602
2gc8885Polyprotein/0.593
4mk728OGenome polyprotein2.7.7.480.592
3igvB80Genome polyprotein2.7.7.480.591
2giqNN2Genome polyprotein2.7.7.480.590
3u4o08EGenome polyprotein2.7.7.480.585
3g86T18Genome polyprotein2.7.7.480.576
4mka2AYGenome polyprotein2.7.7.480.559
3gnvXNZGenome polyprotein2.7.7.480.551
3hkyIX6Genome polyprotein2.7.7.480.551
3tyvHI3Genome polyprotein2.7.7.480.546
3u4r08FGenome polyprotein2.7.7.480.544
3h2lYAKGenome polyprotein2.7.7.480.543
3br9DEYGenome polyprotein2.7.7.480.538
3d28B34Genome polyprotein2.7.7.480.534
3bsc2PDGenome polyprotein2.7.7.480.532
4mkb28VGenome polyprotein2.7.7.480.528
4mk928RGenome polyprotein2.7.7.480.522
3ska053Genome polyprotein2.7.7.480.521
3hkwIX6Genome polyprotein2.7.7.480.514
3ske054Genome polyprotein2.7.7.480.511
2yoj8Y6Genome polyprotein2.7.7.480.505
3d5m4MSGenome polyprotein2.7.7.480.495
4eaw0NQGenome polyprotein2.7.7.480.488
1nb6UTPGenome polyprotein2.7.7.480.448