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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3csoXNIGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3csoXNIGenome polyprotein2.7.7.481.000
3h59H59Genome polyprotein2.7.7.480.621
3u4r08FGenome polyprotein2.7.7.480.593
3uph0C1Genome polyprotein2.7.7.480.590
2giqNN2Genome polyprotein2.7.7.480.584
3igvB80Genome polyprotein2.7.7.480.584
3d5m4MSGenome polyprotein2.7.7.480.580
3hkyIX6Genome polyprotein2.7.7.480.571
4mka2AYGenome polyprotein2.7.7.480.558
3g86T18Genome polyprotein2.7.7.480.557
3d28B34Genome polyprotein2.7.7.480.546
2gc8885Polyprotein/0.544
3h2lYAKGenome polyprotein2.7.7.480.544
3u4o08EGenome polyprotein2.7.7.480.543
3tyvHI3Genome polyprotein2.7.7.480.541
3bsc2PDGenome polyprotein2.7.7.480.539
3br9DEYGenome polyprotein2.7.7.480.537
3gnvXNZGenome polyprotein2.7.7.480.536
3gynB42Genome polyprotein2.7.7.480.531
3hkwIX6Genome polyprotein2.7.7.480.522
4eaw0NQGenome polyprotein2.7.7.480.514
4mk928RGenome polyprotein2.7.7.480.514
4mkb28VGenome polyprotein2.7.7.480.513
3ska053Genome polyprotein2.7.7.480.511
3ske054Genome polyprotein2.7.7.480.505
4ih61EPGenome polyprotein2.7.7.480.492
4ih71ERGenome polyprotein2.7.7.480.487
3golXNDGenome polyprotein2.7.7.480.486
3cdeN3HGenome polyprotein2.7.7.480.469
2yoj8Y6Genome polyprotein2.7.7.480.468
4mk728OGenome polyprotein2.7.7.480.468
3upi0C2Genome polyprotein2.7.7.480.446