2.220 Å
X-ray
2013-01-29
| Name: | Genome polyprotein |
|---|---|
| ID: | POLG_HCVJ4 |
| AC: | O92972 |
| Organism: | Hepatitis C virus genotype 1b |
| Reign: | Viruses |
| TaxID: | 420174 |
| EC Number: | 2.7.7.48 |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 33.361 |
|---|---|
| Number of residues: | 29 |
| Including | |
| Standard Amino Acids: | 29 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.337 | 533.250 |
| % Hydrophobic | % Polar |
|---|---|
| 32.91 | 67.09 |
| According to VolSite | |

| HET Code: | 2BI |
|---|---|
| Formula: | C10H6Cl3N2O3S |
| Molecular weight: | 340.590 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 56.48 % |
| Polar Surface area: | 82.65 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 3 |
| H-Bond Donors: | 0 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 3 |
| X | Y | Z |
|---|---|---|
| -26.6295 | 45.7887 | 31.2354 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| CL7 | CE1 | PHE- 193 | 3.29 | 0 | Hydrophobic |
| CL8 | CG | ARG- 200 | 4.43 | 0 | Hydrophobic |
| CL7 | CB | ASN- 316 | 3.72 | 0 | Hydrophobic |
| C4 | CB | CYS- 366 | 3.95 | 0 | Hydrophobic |
| C3 | SG | CYS- 366 | 3.37 | 0 | Hydrophobic |
| CL8 | CD2 | LEU- 384 | 3.37 | 0 | Hydrophobic |
| CL9 | CD2 | LEU- 384 | 4.03 | 0 | Hydrophobic |
| C16 | CB | MET- 414 | 4.03 | 0 | Hydrophobic |
| CL9 | CE | MET- 414 | 3.44 | 0 | Hydrophobic |
| CL9 | CZ | TYR- 415 | 3.83 | 0 | Hydrophobic |
| O13 | N | TYR- 448 | 3.08 | 145.9 | H-Bond (Protein Donor) |
| CL7 | CE1 | TYR- 448 | 4.21 | 0 | Hydrophobic |