2.220 Å
X-ray
2013-01-29
Name: | Genome polyprotein |
---|---|
ID: | POLG_HCVJ4 |
AC: | O92972 |
Organism: | Hepatitis C virus genotype 1b |
Reign: | Viruses |
TaxID: | 420174 |
EC Number: | 2.7.7.48 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 33.361 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.337 | 533.250 |
% Hydrophobic | % Polar |
---|---|
32.91 | 67.09 |
According to VolSite |
HET Code: | 2BI |
---|---|
Formula: | C10H6Cl3N2O3S |
Molecular weight: | 340.590 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 56.48 % |
Polar Surface area: | 82.65 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 3 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 2 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 3 |
X | Y | Z |
---|---|---|
-26.6295 | 45.7887 | 31.2354 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
CL7 | CE1 | PHE- 193 | 3.29 | 0 | Hydrophobic |
CL8 | CG | ARG- 200 | 4.43 | 0 | Hydrophobic |
CL7 | CB | ASN- 316 | 3.72 | 0 | Hydrophobic |
C4 | CB | CYS- 366 | 3.95 | 0 | Hydrophobic |
C3 | SG | CYS- 366 | 3.37 | 0 | Hydrophobic |
CL8 | CD2 | LEU- 384 | 3.37 | 0 | Hydrophobic |
CL9 | CD2 | LEU- 384 | 4.03 | 0 | Hydrophobic |
C16 | CB | MET- 414 | 4.03 | 0 | Hydrophobic |
CL9 | CE | MET- 414 | 3.44 | 0 | Hydrophobic |
CL9 | CZ | TYR- 415 | 3.83 | 0 | Hydrophobic |
O13 | N | TYR- 448 | 3.08 | 145.9 | H-Bond (Protein Donor) |
CL7 | CE1 | TYR- 448 | 4.21 | 0 | Hydrophobic |