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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iz02BIGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
4iz02BIGenome polyprotein2.7.7.481.000
3ska053Genome polyprotein2.7.7.480.687
3upi0C2Genome polyprotein2.7.7.480.653
3uph0C1Genome polyprotein2.7.7.480.649
4ih71ERGenome polyprotein2.7.7.480.625
2fvc888Polyprotein/0.616
3h5uH5UGenome polyprotein2.7.7.480.614
3co93MSGenome polyprotein2.7.7.480.613
3u4r08FGenome polyprotein2.7.7.480.613
3g86T18Genome polyprotein2.7.7.480.612
4ih61EPGenome polyprotein2.7.7.480.608
3golXNDGenome polyprotein2.7.7.480.602
3tyvHI3Genome polyprotein2.7.7.480.601
3e51N35Genome polyprotein2.7.7.480.598
3d5m4MSGenome polyprotein2.7.7.480.590
1z4uPH9Polyprotein/0.587
4mk728OGenome polyprotein2.7.7.480.586
3csoXNIGenome polyprotein2.7.7.480.585
2yoj8Y6Genome polyprotein2.7.7.480.583
3cdeN3HGenome polyprotein2.7.7.480.581
2gc8885Polyprotein/0.577
3h5sH5SGenome polyprotein2.7.7.480.576
3cwj321Genome polyprotein2.7.7.480.575
3gnvXNZGenome polyprotein2.7.7.480.574
3bsa1PDGenome polyprotein2.7.7.480.571
3hkyIX6Genome polyprotein2.7.7.480.571
3igvB80Genome polyprotein2.7.7.480.564
3d28B34Genome polyprotein2.7.7.480.559
3gynB42Genome polyprotein2.7.7.480.559
4mk928RGenome polyprotein2.7.7.480.559
3gnwXNCGenome polyprotein2.7.7.480.546
3h98B5PGenome polyprotein2.7.7.480.545
3h59H59Genome polyprotein2.7.7.480.543
3h2lYAKGenome polyprotein2.7.7.480.538
3cvkN34Genome polyprotein2.7.7.480.537
4eaw0NQGenome polyprotein2.7.7.480.525
3fqk79ZGenome polyprotein2.7.7.480.519
1yvfPH7Polyprotein/0.505
3hkwIX6Genome polyprotein2.7.7.480.500
2qe5617Polyprotein/0.446