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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
4iz02BIGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
4iz02BIGenome polyprotein2.7.7.481.000
3ska053Genome polyprotein2.7.7.480.723
3ske054Genome polyprotein2.7.7.480.667
3u4o08EGenome polyprotein2.7.7.480.661
3upi0C2Genome polyprotein2.7.7.480.651
4ih61EPGenome polyprotein2.7.7.480.650
3uph0C1Genome polyprotein2.7.7.480.642
3u4r08FGenome polyprotein2.7.7.480.638
4ih71ERGenome polyprotein2.7.7.480.638
3bsc2PDGenome polyprotein2.7.7.480.630
3co93MSGenome polyprotein2.7.7.480.620
3bsa1PDGenome polyprotein2.7.7.480.618
3g86T18Genome polyprotein2.7.7.480.618
2fvc888Polyprotein/0.615
3gnvXNZGenome polyprotein2.7.7.480.614
3h5uH5UGenome polyprotein2.7.7.480.613
3d28B34Genome polyprotein2.7.7.480.610
3cdeN3HGenome polyprotein2.7.7.480.608
4mk728OGenome polyprotein2.7.7.480.608
2giqNN2Genome polyprotein2.7.7.480.607
2gc8885Polyprotein/0.606
3tyvHI3Genome polyprotein2.7.7.480.605
3e51N35Genome polyprotein2.7.7.480.602
4mka2AYGenome polyprotein2.7.7.480.602
3golXNDGenome polyprotein2.7.7.480.600
3gynB42Genome polyprotein2.7.7.480.599
4mk928RGenome polyprotein2.7.7.480.594
3csoXNIGenome polyprotein2.7.7.480.593
1z4uPH9Polyprotein/0.592
3br9DEYGenome polyprotein2.7.7.480.591
2yoj8Y6Genome polyprotein2.7.7.480.588
3d5m4MSGenome polyprotein2.7.7.480.587
4mkb28VGenome polyprotein2.7.7.480.587
3cwj321Genome polyprotein2.7.7.480.581
3h5sH5SGenome polyprotein2.7.7.480.575
3igvB80Genome polyprotein2.7.7.480.574
4mk828QGenome polyprotein2.7.7.480.551
3gnwXNCGenome polyprotein2.7.7.480.547
1yvfPH7Polyprotein/0.542
3h98B5PGenome polyprotein2.7.7.480.540
3cvkN34Genome polyprotein2.7.7.480.537
2qe5617Polyprotein/0.480
3fqk79ZGenome polyprotein2.7.7.480.456
3h59H59Genome polyprotein2.7.7.480.447
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.445
4rvfTYDD-mycarose 3-C-methyltransferase/0.442