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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2zshGA3Gibberellin receptor GID1A3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2zshGA3Gibberellin receptor GID1A31.000
3eblGA4Gibberellin receptor GID1/0.612
3ed1GA3Gibberellin receptor GID1/0.612
2zsiGA4Gibberellin receptor GID1A30.551
1b2lNDCAlcohol dehydrogenase1.1.1.10.461
3hk1B64Fatty acid-binding protein, adipocyte/0.460
2nnqT4BFatty acid-binding protein, adipocyte/0.459
1towCRZFatty acid-binding protein, adipocyte/0.458
3tr05GPGuanylate kinase/0.458
3u9eCOALmo1369 protein/0.456
3d8vUD1Bifunctional protein GlmU/0.454
3fr4F8AFatty acid-binding protein, adipocyte/0.452
4a312CBGlycylpeptide N-tetradecanoyltransferase/0.452
4en4ATPPyridoxal kinase2.7.1.350.452
2vuuNAPNitrogen metabolite repression protein nmrA/0.450
2ql6ADPNicotinamide riboside kinase 1/0.449
3fr28CAFatty acid-binding protein, adipocyte/0.447
1rywEPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase/0.446
4u0oMTALipoyl synthase 2/0.444
5kgpACOPredicted acetyltransferase/0.444
1b5eDCMDeoxycytidylate 5-hydroxymethyltransferase2.1.2.80.443
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.442
3c4aFADProtodeoxyviolaceinate monooxygenase10.442
2ok7FADFerredoxin--NADP reductase, apicoplast/0.440