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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2vesGVRUDP-3-O-acyl-N-acetylglucosamine deacetylase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2vesGVRUDP-3-O-acyl-N-acetylglucosamine deacetylase/1.000
4lch1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.487
4lcf1WLUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.480
4fw3L52UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.461
3nzkC90UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.454
3p3e3P3UDP-3-O-acyl-N-acetylglucosamine deacetylase/0.452
4mqy2CWUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.451
3gw9VNILanosterol 14-alpha-demethylase/0.445
4lcg1WMUDP-3-O-acyl-N-acetylglucosamine deacetylase/0.444
4q72FADBifunctional protein PutA/0.444
4g3jVNTLanosterol 14-alpha-demethylase/0.443