2.000 Å
X-ray
2013-09-17
| Name: | UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|---|
| ID: | LPXC_ECOLI |
| AC: | P0A725 |
| Organism: | Escherichia coli |
| Reign: | Bacteria |
| TaxID: | 83333 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 100 % |
| B-Factor: | 47.172 |
|---|---|
| Number of residues: | 38 |
| Including | |
| Standard Amino Acids: | 36 |
| Non Standard Amino Acids: | 1 |
| Water Molecules: | 1 |
| Cofactors: | |
| Metals: | ZN |
| Ligandability | Volume (Å3) |
|---|---|
| 1.034 | 590.625 |
| % Hydrophobic | % Polar |
|---|---|
| 48.00 | 52.00 |
| According to VolSite | |

| HET Code: | 2CW |
|---|---|
| Formula: | C22H19N3O4 |
| Molecular weight: | 389.404 g/mol |
| DrugBank ID: | - |
| Buried Surface Area: | 63.34 % |
| Polar Surface area: | 121.84 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 6 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 2 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 7 |
| X | Y | Z |
|---|---|---|
| 192.119 | 101.309 | 5.04203 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C09 | CD2 | LEU- 18 | 3.67 | 0 | Hydrophobic |
| C24 | CD2 | LEU- 62 | 4.35 | 0 | Hydrophobic |
| C09 | CG2 | THR- 191 | 3.82 | 0 | Hydrophobic |
| C28 | CZ | PHE- 192 | 3.76 | 0 | Hydrophobic |
| C18 | CE | MET- 195 | 3.81 | 0 | Hydrophobic |
| C13 | CD1 | ILE- 198 | 3.26 | 0 | Hydrophobic |
| C21 | CG2 | ILE- 198 | 3.46 | 0 | Hydrophobic |
| C12 | CD1 | ILE- 198 | 3.61 | 0 | Hydrophobic |
| C12 | SG | CYS- 207 | 4.44 | 0 | Hydrophobic |
| C12 | CB | ALA- 215 | 3.69 | 0 | Hydrophobic |
| C14 | CG2 | VAL- 217 | 4.03 | 0 | Hydrophobic |
| C17 | CG2 | VAL- 217 | 3.92 | 0 | Hydrophobic |
| O04 | NE2 | HIS- 265 | 2.86 | 147.57 | H-Bond (Protein Donor) |
| O01 | ZN | ZN- 401 | 2.41 | 0 | Metal Acceptor |
| O04 | ZN | ZN- 401 | 1.98 | 0 | Metal Acceptor |