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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2rd678PPoly [ADP-ribose] polymerase 12.4.2.30

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2rd678PPoly [ADP-ribose] polymerase 12.4.2.301.000
3gn73GNPoly [ADP-ribose] polymerase 12.4.2.300.682
3l3lL3LPoly [ADP-ribose] polymerase 12.4.2.300.616
3l3mA92Poly [ADP-ribose] polymerase 12.4.2.300.600
2rcwAAIPoly [ADP-ribose] polymerase 12.4.2.300.588
3gjwGJWPoly [ADP-ribose] polymerase 12.4.2.300.556
1uk0FRMPoly [ADP-ribose] polymerase 12.4.2.300.548
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.545
4hhy15RPoly [ADP-ribose] polymerase 12.4.2.300.540
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.533
1efyBZCPoly [ADP-ribose] polymerase 12.4.2.300.508
4r5wXAVPoly [ADP-ribose] polymerase 12.4.2.300.506
3c49KU8Poly [ADP-ribose] polymerase 32.4.2.300.498
1paxDHQPoly [ADP-ribose] polymerase 12.4.2.300.497
1uk1FRQPoly [ADP-ribose] polymerase 12.4.2.300.485
4gv25MEPoly [ADP-ribose] polymerase 32.4.2.300.470
3ce0P34Poly [ADP-ribose] polymerase 32.4.2.300.463
4gv7MEWPoly [ADP-ribose] polymerase 12.4.2.300.458
5ds309LPoly [ADP-ribose] polymerase 12.4.2.300.458
4l6s1WQPoly [ADP-ribose] polymerase 12.4.2.300.457
4gv08MEPoly [ADP-ribose] polymerase 32.4.2.300.455
3c4hDRLPoly [ADP-ribose] polymerase 32.4.2.300.453
4gv4MEJPoly [ADP-ribose] polymerase 32.4.2.300.447