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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2j9gANPBiotin carboxylase6.3.4.14

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2j9gANPBiotin carboxylase6.3.4.141.000
2vr1ATFBiotin carboxylase6.3.4.140.564
4mv8ACPBiotin carboxylase6.3.4.140.511
4mv1ADPBiotin carboxylase6.3.4.140.507
3jziJZLBiotin carboxylase6.3.4.140.485
4mv4ACPBiotin carboxylase6.3.4.140.485
2v5aLZLBiotin carboxylase6.3.4.140.476
1dv2ATPBiotin carboxylase6.3.4.140.462
2w6qOA5Biotin carboxylase6.3.4.140.455
2v58LZJBiotin carboxylase6.3.4.140.454
2w6oOA3Biotin carboxylase6.3.4.140.447
3g8dADPBiotin carboxylase6.3.4.140.445
2w71L23Biotin carboxylase6.3.4.140.442