sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1wnb | NAI | Gamma-aminobutyraldehyde dehydrogenase | 1.2.1.19 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1wnb | NAI | Gamma-aminobutyraldehyde dehydrogenase | 1.2.1.19 | 1.000 | |
| 4fqf | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.543 | |
| 2onp | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.521 | |
| 1o01 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.508 | |
| 2ehu | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.508 | |
| 4pt0 | NAD | Aldehyde dehydrogenase | / | 0.508 | |
| 3iwk | NAD | Aminoaldehyde dehydrogenase | / | 0.497 | |
| 4itb | NDP | Succinate-semialdehyde dehydrogenase | / | 0.495 | |
| 4v37 | NAD | Betaine aldehyde dehydrogenase, chloroplastic | 1.2.1.8 | 0.494 | |
| 3n82 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.492 | |
| 3haz | NAD | Bifunctional protein PutA | / | 0.491 | |
| 1ad3 | NAD | Aldehyde dehydrogenase, dimeric NADP-preferring | / | 0.488 | |
| 4pxl | NAD | Aldehyde dehydrogenase3 | / | 0.485 | |
| 4x4l | NAI | Retinal dehydrogenase 1 | 1.2.1.36 | 0.484 | |
| 4go2 | TAP | Cytosolic 10-formyltetrahydrofolate dehydrogenase | 1.5.1.6 | 0.483 | |
| 3v9l | NAD | Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial | 1.2.1.88 | 0.480 | |
| 1o00 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.479 | |
| 2eit | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.479 | |
| 2bhp | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.478 | |
| 2eii | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.478 | |
| 2j40 | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.477 | |
| 1nzw | NAI | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.476 | |
| 4f3x | NAD | Putative aldehyde dehydrogenase | / | 0.474 | |
| 1o04 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.473 | |
| 1nzz | NAI | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.472 | |
| 5eyu | NAD | Betaine-aldehyde dehydrogenase | / | 0.472 | |
| 2j5n | NAD | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.470 | |
| 1o02 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.466 | |
| 1bxs | NAD | Retinal dehydrogenase 1 | 1.2.1.36 | 0.465 | |
| 2ehq | NAP | 1-pyrroline-5-carboxylate dehydrogenase | / | 0.464 | |
| 4pz2 | NAD | Aldehyde dehydrogenase 2-6 | / | 0.464 | |
| 2onm | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.462 | |
| 4zz7 | NAD | Methylmalonate-semialdehyde dehydrogenase | / | 0.461 | |
| 4wb9 | NAI | Retinal dehydrogenase 1 | 1.2.1.36 | 0.459 | |
| 1nzx | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.449 | |
| 4fr8 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.448 | |
| 1cw3 | NAD | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.444 | |
| 3n83 | ADP | Aldehyde dehydrogenase, mitochondrial | 1.2.1.3 | 0.444 | |
| 4pt3 | NDP | Aldehyde dehydrogenase | / | 0.444 | |
| 3lns | NAP | NAD(P)-dependent benzaldehyde dehydrogenase | 1.2.1.28 | 0.440 |