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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1udcUFMUDP-glucose 4-epimerase5.1.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1udcUFMUDP-glucose 4-epimerase5.1.3.21.000
1udbUFGUDP-glucose 4-epimerase5.1.3.20.756
1kvuUPGUDP-glucose 4-epimerase5.1.3.20.558
1ek6UPGUDP-glucose 4-epimerase/0.536
2udpUPPUDP-glucose 4-epimerase5.1.3.20.531
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.519
1i3kUPGUDP-glucose 4-epimerase/0.513
1lrlUPGUDP-glucose 4-epimerase5.1.3.20.513
1i3mUD1UDP-glucose 4-epimerase/0.505
1lrjUD1UDP-glucose 4-epimerase5.1.3.20.495
1i3nUD1UDP-glucose 4-epimerase/0.482
1lrkUD1UDP-glucose 4-epimerase5.1.3.20.475