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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ek6UPGUDP-glucose 4-epimerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ek6UPGUDP-glucose 4-epimerase/1.000
1udcUFMUDP-glucose 4-epimerase5.1.3.20.586
1kvtUPGUDP-glucose 4-epimerase5.1.3.20.580
1i3kUPGUDP-glucose 4-epimerase/0.558
1udbUFGUDP-glucose 4-epimerase5.1.3.20.557
1i3mUD1UDP-glucose 4-epimerase/0.543
2udpUPPUDP-glucose 4-epimerase5.1.3.20.537
1i3nUD1UDP-glucose 4-epimerase/0.534
1kvuUPGUDP-glucose 4-epimerase5.1.3.20.481
1lrjUD1UDP-glucose 4-epimerase5.1.3.20.471
1i3lGDUUDP-glucose 4-epimerase/0.466
4zrnUPGUDP-glucose 4-epimerase, putative/0.459
1lrlUPGUDP-glucose 4-epimerase5.1.3.20.453
1lrkUD1UDP-glucose 4-epimerase5.1.3.20.444