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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1cjtFOKAdenylate cyclase type 2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1cjtFOKAdenylate cyclase type 2/1.000
1cjtFOKAdenylate cyclase type 5/1.000
1cjuFOKAdenylate cyclase type 2/0.775
1cjuFOKAdenylate cyclase type 5/0.775
1cs4FOKAdenylate cyclase type 2/0.690
1cs4FOKAdenylate cyclase type 5/0.690
1culFOKAdenylate cyclase type 2/0.687
1culFOKAdenylate cyclase type 5/0.687
1tl7FOKAdenylate cyclase type 2/0.667
1tl7FOKAdenylate cyclase type 5/0.667
1cjkFOKAdenylate cyclase type 2/0.660
1cjkFOKAdenylate cyclase type 5/0.660
3c15FOKAdenylate cyclase type 2/0.619
3c15FOKAdenylate cyclase type 5/0.619
1u0hFOKAdenylate cyclase type 2/0.608
1u0hFOKAdenylate cyclase type 5/0.608
1cjvFOKAdenylate cyclase type 2/0.604
1cjvFOKAdenylate cyclase type 5/0.604
2gvdFKPAdenylate cyclase type 2/0.583
2gvdFKPAdenylate cyclase type 5/0.583
3maaFKPAdenylate cyclase type 2/0.544
3maaFKPAdenylate cyclase type 5/0.544
3c16FOKAdenylate cyclase type 2/0.536
3c16FOKAdenylate cyclase type 5/0.536
3c14FOKAdenylate cyclase type 2/0.521
3c14FOKAdenylate cyclase type 5/0.521
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.459
4bfxZVXPantothenate kinase2.7.1.330.445
4i6gFADCryptochrome-2/0.444