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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5tgz FMN Cannabinoid receptor 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5tgz FMNCannabinoid receptor 1 / 1.121
1akw FMNFlavodoxin / 0.950
1azl FMNFlavodoxin / 0.920
1wsb FMNFlavodoxin / 0.920
1akr FMNFlavodoxin / 0.911
2fx2 FMNFlavodoxin / 0.911
1xyv FMNFlavodoxin / 0.900
1j8q FMNFlavodoxin / 0.898
1aku FMNFlavodoxin / 0.885
1j9g FMNFlavodoxin / 0.884
1xyy FMNFlavodoxin / 0.868
3f6s FMNFlavodoxin / 0.860
1c7f FMNFlavodoxin / 0.844
5xra FMNCannabinoid receptor 1 / 0.840
5xr8 FMNCannabinoid receptor 1 / 0.838
1ofv FMNFlavodoxin / 0.831
1fx1 FMNFlavodoxin / 0.827
4fx2 FMNFlavodoxin / 0.826
3esz FMNFlavodoxin / 0.824
2v5v FMNFlavodoxin / 0.823
3f6r FMNFlavodoxin / 0.816
1ahn FMNFlavodoxin 1 / 0.804
2fcr FMNFlavodoxin / 0.798
1yob FMNFlavodoxin 2 / 0.797
1fue FMNFlavodoxin / 0.791
3f90 FMNFlavodoxin / 0.791
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.787
1czn FMNFlavodoxin / 0.786
2v5u FMNFlavodoxin / 0.779
4bmo FMNProtein NrdI / 0.768
4bmp FMNProtein NrdI / 0.768
4yao FMNNADPH--cytochrome P450 reductase / 0.768
3esy FMNFlavodoxin / 0.765
3n39 FMNProtein NrdI / 0.764
4oxx FMNCindoxin / 0.760
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.755
2bf4 FMNNADPH--cytochrome P450 reductase / 0.752
2w5u FMNFlavodoxin / 0.751
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.748
1amo FMNNADPH--cytochrome P450 reductase / 0.746
5fx2 FMNFlavodoxin / 0.728
3qe2 FMNNADPH--cytochrome P450 reductase / 0.724
4y7c FMNNADPH--cytochrome P450 reductase / 0.722
3ojw FMNNADPH--cytochrome P450 reductase / 0.715
3kap FMNFlavodoxin / 0.714
1ja0 FMNNADPH--cytochrome P450 reductase / 0.709
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.707
3qfr FMNNADPH--cytochrome P450 reductase / 0.700
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.693
2bn4 FMNNADPH--cytochrome P450 reductase / 0.690
2ohj FMNType A flavoprotein FprA 1 0.690
3kaq FMNFlavodoxin / 0.689
2ohi FMNType A flavoprotein FprA 1 0.686
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.685
1ycg FMNNitric oxide reductase 1 0.684
1ja1 FMNNADPH--cytochrome P450 reductase / 0.683
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.681
1ych FMNNitric oxide reductase 1 0.680
3n3a FMNProtein NrdI / 0.679
1bu5 RBFFlavodoxin / 0.674
1ycf FMNNitric oxide reductase 1 0.674
3ojx FMNNADPH--cytochrome P450 reductase / 0.672
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.664
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.663
2z9d FMNFMN-dependent NADH-azoreductase / 0.663
3n3b FMNProtein NrdI / 0.663
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.663
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 0.663
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.659
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.659
4j8p FMNFlavodoxin / 0.658
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.658
2ohh FMNType A flavoprotein FprA 1 0.653