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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5kgj ACO Predicted acetyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5kgj ACOPredicted acetyltransferase / 1.238
5kf2 ACOPredicted acetyltransferase / 1.214
5kf9 ACOPredicted acetyltransferase / 1.213
5kf8 ACOPredicted acetyltransferase / 1.195
5kgp ACOPredicted acetyltransferase / 1.179
5kf1 ACOPredicted acetyltransferase / 1.092
5kgh ACOPredicted acetyltransferase / 1.049
2cns ACORibosomal-protein-alanine acetyltransferase / 0.917
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.883
1wwz ACOUncharacterized protein / 0.873
2fiw ACOGCN5-related N-acetyltransferase:Aminotransferase, class-II / 0.865
4lx9 ACON-alpha-acetyltransferase 2.3.1 0.856
2bsw CAOProbable acetyltransferase / 0.852
2jdc CAOProbable acetyltransferase / 0.849
5h84 1VUHistone acetyltransferase KAT2A 2.3.1.48 0.841
1ghe ACOAcetyltransferase 2.3.1 0.833
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.830
3k9u ACOSpermidine N(1)-acetyltransferase / 0.827
1n71 COAAac(6')-Ii protein / 0.822
2jdd ACOProbable acetyltransferase / 0.821
4hkf ACOAlpha-tubulin N-acetyltransferase 1 / 0.820
2cy2 ACOProbable acetyltransferase / 0.819
3exn ACOProbable acetyltransferase / 0.814
3f0a ACOSpermidine N(1)-acetyltransferase / 0.814
1j4j ACOAcetyltransferase 2.3.1 0.809
2rc4 ACOHistone acetyltransferase KAT6A / 0.805
4zm6 ACON-acetyl-beta-D glucosaminidase / 0.804
2vez ACOGlucosamine 6-phosphate acetyltransferase, putative / 0.801
1kuv CA5Serotonin N-acetyltransferase / 0.800
1z4r ACOHistone acetyltransferase KAT2A 2.3.1.48 0.799
1cjw COTSerotonin N-acetyltransferase / 0.793
1l0c COTSerotonin N-acetyltransferase / 0.793
1ozp ACOMycothiol acetyltransferase 2.3.1.189 0.793
2psw COAN-alpha-acetyltransferase 50 / 0.791
2vxk COAGlucosamine 6-phosphate acetyltransferase, putative / 0.790
2zpa ACOtRNA(Met) cytidine acetyltransferase TmcA / 0.789
4b5p ACOAlpha-tubulin N-acetyltransferase 1 / 0.788
2a4n COAAac(6')-Ii protein / 0.781
2fxf ACODiamine acetyltransferase 1 / 0.779
2r8v ACOAmino-acid acetyltransferase / 0.778
1pu9 COAHAT A1 / 0.776
3d2m COAAmino-acid acetyltransferase / 0.776
3mgd ACOPredicted acetyltransferase / 0.775
4kvx ACON-terminal acetyltransferase A complex catalytic subunit ard1 2.3.1.88 0.775
4u9v ACON-alpha-acetyltransferase 40 2.3.1 0.775
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.773
1qsr ACOHAT A1 / 0.771
3te4 ACODopamine N-acetyltransferase / 0.771
2b3v ACODiamine acetyltransferase 1 / 0.761
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.761
4jwp ACOGCN5-related N-acetyltransferase / 0.753
4r3k COAN-alpha-acetyltransferase 2.3.1 0.753
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.751
2x7b COAN-alpha-acetyltransferase 2.3.1 0.750
3gy9 COAGCN5-related N-acetyltransferase / 0.750
3pgp ACOUncharacterized protein / 0.748
5h86 BCOHistone acetyltransferase KAT2A 2.3.1.48 0.748
1qsn COAHAT A1 / 0.747
2ou2 ACOHistone acetyltransferase KAT5 / 0.746
4gs4 ACOAlpha-tubulin N-acetyltransferase 1 / 0.746
1b87 ACOAac(6')-Ii protein / 0.743
3r1k COAN-acetyltransferase Eis / 0.743
4qvt ACOAcetyltransferase YpeA 2.3.1 0.742
1pua COAHAT A1 / 0.739
2c27 ACOMycothiol acetyltransferase 2.3.1.189 0.739
1mj9 COAHistone acetyltransferase ESA1 / 0.738
3to6 LYS_CMCHistone acetyltransferase ESA1 / 0.738
4crz ACOPanD regulatory factor / 0.737
1i12 ACOGlucosamine 6-phosphate N-acetyltransferase / 0.728
3sxn COAN-acetyltransferase Eis / 0.722
2ozu ACOHistone acetyltransferase KAT6A / 0.721
4kub COAUncharacterized protein / 0.719
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.713
1p0h ACOMycothiol acetyltransferase 2.3.1.189 0.711
1tiq COASpermidine/spermine N(1)-acetyltransferase / 0.710
4ua3 COAN-alpha-acetyltransferase 40 2.3.1 0.709
1kux CA3Serotonin N-acetyltransferase / 0.707
3cz7 ACOHistone acetyltransferase RTT109 2.3.1.48 0.705
1fy7 COAHistone acetyltransferase ESA1 / 0.703
2giv ACOHistone acetyltransferase KAT8 / 0.702
1kuy COTSerotonin N-acetyltransferase / 0.700
5kf8 COAPredicted acetyltransferase / 0.699
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.698
1mjb ACOHistone acetyltransferase ESA1 / 0.695
1qsm ACOHistone acetyltransferase HPA2 / 0.694
3gya COAGCN5-related N-acetyltransferase / 0.693
4u9z COAAlpha-tubulin N-acetyltransferase 1 / 0.693
4mxe ACON-acetyltransferase ESCO1 2.3.1 0.690
2zfn ACOHistone acetyltransferase RTT109 2.3.1.48 0.686
3f8k COAUncharacterized protein / 0.685
3vwd ACOAlpha-tubulin N-acetyltransferase 1 / 0.681
4psw COAHistone acetyltransferase type B catalytic subunit / 0.681
1ib1 COTSerotonin N-acetyltransferase / 0.678
3r96 ACOMccE protein / 0.678
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.676
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.675
1m1d LYXHAT A1 / 0.673
3zj0 ACOPutative acetyltransferase OgpAT / 0.672
4b5o ACOAlpha-tubulin N-acetyltransferase 1 / 0.672
4if5 ACOAlpha-tubulin N-acetyltransferase 1 / 0.672
4u9y COAAlpha-tubulin N-acetyltransferase 1 / 0.672
4xpd ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.672
5kf1 COAPredicted acetyltransferase / 0.671
4ag9 COAGlucosamine 6-phosphate N-acetyltransferase / 0.669
4ri1 ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase 2.3.1.202 0.669
5kf2 COAPredicted acetyltransferase / 0.666
3r95 ACOMccE protein / 0.662
2ob0 ACON-alpha-acetyltransferase 50 / 0.661
2ft0 ACOdTDP-fucosamine acetyltransferase / 0.658
2zw5 COABleomycin acetyltransferase / 0.652
4jxr ACOAcetyltransferase / 0.652
2vzz SCAPutative succinyl-CoA transferase Rv0802c 2.8.3 0.651