Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
5ees | NAP | 4-hydroxy-tetrahydrodipicolinate reductase |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
5ees | NAP | 4-hydroxy-tetrahydrodipicolinate reductase | / | 0.993 | |
1yl7 | NAI | 4-hydroxy-tetrahydrodipicolinate reductase | / | 0.798 | |
4ywj | NAD | 4-hydroxy-tetrahydrodipicolinate reductase | / | 0.777 | |
3oq6 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.752 | |
4dwv | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.752 | |
4nfh | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.752 | |
5kje | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.752 | |
5kcp | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.748 | |
5cdg | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.744 | |
5kcz | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.743 | |
5kj1 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.737 | |
5cds | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.735 | |
5kj6 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.735 | |
1hld | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.730 | |
1agn | NAD | Alcohol dehydrogenase class 4 mu/sigma chain | 1.1.1.1 | 0.722 | |
4hfm | NAP | 2-alkenal reductase (NADP(+)-dependent) | / | 0.722 | |
4dxh | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.720 | |
1mgo | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.719 | |
1o6z | NAD | Malate dehydrogenase | / | 0.718 | |
5kjf | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.718 | |
5cdt | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.717 | |
1axg | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.714 | |
1hdz | NAD | Alcohol dehydrogenase 1B | 1.1.1.1 | 0.706 | |
5kjc | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.705 | |
2ohx | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.702 | |
4nfs | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.702 | |
1a71 | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.701 | |
1axe | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.699 | |
4mdh | NAD | Malate dehydrogenase, cytoplasmic | 1.1.1.37 | 0.693 | |
2i9p | NAD | 3-hydroxyisobutyrate dehydrogenase, mitochondrial | 1.1.1.31 | 0.690 | |
4nd3 | NAD | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.689 | |
2x0i | NAI | Malate dehydrogenase | / | 0.688 | |
3pdu | NAP | Glyoxalate/3-oxopropanoate/4-oxobutanoate reductase | / | 0.688 | |
4gkv | NAD | Alcohol dehydrogenase, propanol-preferring | 1.1.1.1 | 0.685 | |
4ng5 | NAJ | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.685 | |
1lde | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.684 | |
1p0f | NAP | NADP-dependent alcohol dehydrogenase | 1.1.1.2 | 0.683 | |
1yqd | NAP | Sinapyl alcohol dehydrogenase | / | 0.681 | |
1kvr | NAD | UDP-glucose 4-epimerase | 5.1.3.2 | 0.680 | |
3tqh | NDP | Quinone oxidoreductase | / | 0.680 | |
2oxi | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.677 | |
2zb3 | NDP | Prostaglandin reductase 2 | 1.3.1.48 | 0.674 | |
4dlb | NAD | S-(hydroxymethyl)glutathione dehydrogenase | / | 0.674 | |
1pzf | A3D | Lactate dehydrogenase | / | 0.673 | |
5doz | NDP | JamJ | / | 0.671 | |
1pj2 | NAI | NAD-dependent malic enzyme, mitochondrial | 1.1.1.38 | 0.670 | |
2eer | NAD | NAD-dependent alcohol dehydrogenase | 1.1.1.1 | 0.670 | |
5env | NAD | Alcohol dehydrogenase 1 | 1.1.1.1 | 0.668 | |
1u3v | NAD | Alcohol dehydrogenase 1B | 1.1.1.1 | 0.664 | |
3pef | NAP | Glyoxalate/3-oxopropanoate/4-oxobutanoate reductase | / | 0.664 | |
2o4c | NAD | Erythronate-4-phosphate dehydrogenase | / | 0.663 | |
2j3k | NAP | NADPH-dependent oxidoreductase 2-alkenal reductase | 1.3.1.74 | 0.662 | |
4jnk | NAI | L-lactate dehydrogenase A chain | 1.1.1.27 | 0.662 | |
3w6u | NAP | 6-phosphogluconate dehydrogenase, NAD-binding protein | / | 0.659 | |
1hsz | NAD | Alcohol dehydrogenase 1B | 1.1.1.1 | 0.658 | |
1ht0 | NAD | Alcohol dehydrogenase 1C | 1.1.1.1 | 0.658 | |
3q3c | NAD | NAD-dependent L-serine dehydrogenase | / | 0.658 | |
2dvm | NAD | 439aa long hypothetical malate oxidoreductase (NAD) [malic enzyme] | / | 0.657 | |
2ejv | NAD | L-threonine 3-dehydrogenase | / | 0.656 | |
1adc | PAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.655 | |
1yqx | NAP | Sinapyl alcohol dehydrogenase | / | 0.655 | |
3qwb | NDP | Probable quinone oxidoreductase | 1.6.5.5 | 0.654 | |
3x2f | NAI | Adenosylhomocysteinase | / | 0.652 | |
1e5q | NDP | Saccharopine dehydrogenase [NADP(+), L-glutamate-forming] | 1.5.1.10 | 0.651 | |
2cda | NAP | Glucose 1-dehydrogenase | / | 0.651 | |
3two | NDP | Mannitol dehydrogenase | / | 0.650 | |
4c4o | NAD | SADH | / | 0.650 |