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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
5cto NTD 4-hydroxyphenylpyruvate dioxygenase 1.13.11.27

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
5cto NTD4-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.939
1t47 NTD4-hydroxyphenylpyruvate dioxygenase 1.13.11.27 0.699
1svw GTPProbable GTP-binding protein EngB / 0.660
2bri ANPUridylate kinase 2.7.4.22 0.660
2xi3 GTPGenome polyprotein 2.7.7.48 0.660
2zue ANPArginine--tRNA ligase 6.1.1.19 0.660
3fwy ADPLight-independent protochlorophyllide reductase iron-sulfur ATP-binding protein / 0.660
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.660
3sop GDPNeuronal-specific septin-3 / 0.660
4g01 GDPRas-related protein RABF2b / 0.660
4jjz ADPFormate--tetrahydrofolate ligase / 0.660
4ldj GDPGTPase KRas / 0.660
4o3m ADPBloom syndrome protein 3.6.4.12 0.660
4yqf GDPSeptin-9 / 0.660
5cyo GDPSeptin-9 / 0.660
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.659
1gx1 CDP2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4.6.1.12 0.658
2xtn GTPGTPase IMAP family member 2 / 0.656
2z7q ACPRibosomal protein S6 kinase alpha-1 2.7.11.1 0.656
3ftq GNPSeptin-2 / 0.656
1esn ANPPantothenate kinase 2.7.1.33 0.655
1f5n GNPGuanylate-binding protein 1 / 0.655
1ky2 GNPGTP-binding protein YPT7 / 0.655
4hdq GNPRas-related protein Rap-1b / 0.655
4goj GNPADP-ribosylation factor-like protein 3 / 0.654
3tjz GNPADP-ribosylation factor 1 / 0.651