sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 1.257 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.831 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.812 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.808 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.804 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.794 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.793 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.786 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.782 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.775 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.774 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.773 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.772 | |
| 3bj7 | COA | Diamine acetyltransferase 1 | / | 0.768 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.767 | |
| 3mgd | ACO | Predicted acetyltransferase | / | 0.766 | |
| 1wwz | ACO | Uncharacterized protein | / | 0.765 | |
| 1p0h | COA | Mycothiol acetyltransferase | 2.3.1.189 | 0.764 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.762 | |
| 3s6f | COA | Uncharacterized protein | / | 0.759 | |
| 1pua | COA | HAT A1 | / | 0.758 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.754 | |
| 2r8v | ACO | Amino-acid acetyltransferase | / | 0.748 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.741 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.739 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.738 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.737 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.728 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.725 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.723 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.722 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.722 | |
| 1i12 | ACO | Glucosamine 6-phosphate N-acetyltransferase | / | 0.720 | |
| 2b58 | COA | Diamine acetyltransferase 1 | / | 0.719 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.718 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.718 | |
| 1l0c | COT | Serotonin N-acetyltransferase | / | 0.716 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.716 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.713 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.711 | |
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.710 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.710 | |
| 1p0h | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.706 | |
| 1pu9 | COA | HAT A1 | / | 0.703 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.696 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.694 | |
| 5h84 | 1VU | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.694 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.691 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.691 | |
| 2x7b | COA | N-alpha-acetyltransferase | 2.3.1 | 0.690 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.688 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.687 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.686 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.685 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.685 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.682 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.682 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.679 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.679 | |
| 1m1d | LYX | HAT A1 | / | 0.677 | |
| 1kuv | CA5 | Serotonin N-acetyltransferase | / | 0.675 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.675 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.674 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.673 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.673 | |
| 1bob | ACO | Histone acetyltransferase type B catalytic subunit | / | 0.671 | |
| 4xpd | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.671 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.670 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.668 | |
| 1cm0 | COA | Histone acetyltransferase KAT2B | 2.3.1.48 | 0.664 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.663 | |
| 3r1k | COA | N-acetyltransferase Eis | / | 0.663 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.660 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.660 | |
| 1qsr | ACO | HAT A1 | / | 0.659 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.659 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.658 | |
| 4h6z | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.657 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.656 | |
| 4qvt | ACO | Acetyltransferase YpeA | 2.3.1 | 0.656 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.653 | |
| 1v0c | ACO | AAC(6')-Ib | / | 0.652 | |
| 4cry | ACO | PanD regulatory factor | / | 0.652 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.650 |