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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xsr UPG Alr3699 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xsr UPGAlr3699 protein / 1.385
1uqt U2FTrehalose-6-phosphate synthase 2.4.1.15 0.928
1uqu UPGTrehalose-6-phosphate synthase 2.4.1.15 0.870
4gpb GFPGlycogen phosphorylase, muscle form 2.4.1.1 0.725
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.713
3ms4 21NGlycogen phosphorylase, muscle form 2.4.1.1 0.713
3mt8 17TGlycogen phosphorylase, muscle form 2.4.1.1 0.708
5gpb GPMGlycogen phosphorylase, muscle form 2.4.1.1 0.699
2g9v IFMGlycogen phosphorylase, muscle form 2.4.1.1 0.690
2iw1 U2FLipopolysaccharide core biosynthesis protein RfaG 2.4 0.685
2uz3 TTPThymidine kinase / 0.670
1xbt TTPThymidine kinase, cytosolic 2.7.1.21 0.662
3u2x ASOGlycogenin-1 2.4.1.186 0.659
5il2 SAHN6-adenosine-methyltransferase 70 kDa subunit / 0.654