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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4wb9 NAI Retinal dehydrogenase 1 1.2.1.36

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4wb9 NAIRetinal dehydrogenase 1 1.2.1.36 1.183
4x4l NAIRetinal dehydrogenase 1 1.2.1.36 1.175
1o02 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 1.021
2onp NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 1.015
1nzz NAIAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.998
3n82 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.986
4pxl NADAldehyde dehydrogenase3 / 0.942
1wnb NAIGamma-aminobutyraldehyde dehydrogenase 1.2.1.19 0.940
1o01 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.918
1nzw NAIAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.903
4itb NDPSuccinate-semialdehyde dehydrogenase / 0.899
4pt0 NADAldehyde dehydrogenase / 0.888
1bxs NADRetinal dehydrogenase 1 1.2.1.36 0.858
2onm NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.841
5eyu NADBetaine-aldehyde dehydrogenase / 0.825
4fqf NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.821
1cw3 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.814
1o00 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.790
4i1w NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.770
4pt3 NDPAldehyde dehydrogenase / 0.766
3n83 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.761
5ez4 NADBetaine-aldehyde dehydrogenase / 0.761
1nzx NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.757
3b4w NADAldehyde dehydrogenase family protein / 0.751
4oe2 NAD2-aminomuconate 6-semialdehyde dehydrogenase / 0.744
4f3x NADPutative aldehyde dehydrogenase / 0.737
1bi9 NADRetinal dehydrogenase 2 / 0.736
4pz2 NADAldehyde dehydrogenase 2-6 / 0.734
4x2q NADRetinal dehydrogenase 2 1.2.1.36 0.731
3rhr NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.718
4zuk NADAlpha-aminoadipic semialdehyde dehydrogenase 1.2.1.31 0.717
4gnz NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.715
2d4e NAD5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseiheyensis HTE831] / 0.714
2j40 NAD1-pyrroline-5-carboxylate dehydrogenase / 0.714
2o2r NDPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.714
4fr8 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.713
3rhj NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.712
4i8q NADPutative betaine aldehyde dehyrogenase / 0.712
2o2q NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.706
4go2 TAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.705
2imp NAILactaldehyde dehydrogenase 1.2.1.22 0.702
5dib NADBetaine-aldehyde dehydrogenase / 0.700
3rho NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.698
3efv NADPutative succinate-semialdehyde dehydrogenase / 0.695
1a4z NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.694
4i3v NADAldehyde dehydrogenase (NAD+) / 0.694
2eit NAD1-pyrroline-5-carboxylate dehydrogenase / 0.692
3rhq NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.691
4fr8 ADPAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.688
2ehq NAP1-pyrroline-5-carboxylate dehydrogenase / 0.683
3rhl NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.683
2y5d NAP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 0.676
4ihi NADProbable pyrroline-5-carboxylate dehydrogenase RocA / 0.671
2j5n NAD1-pyrroline-5-carboxylate dehydrogenase / 0.670
4v37 NADBetaine aldehyde dehydrogenase, chloroplastic 1.2.1.8 0.668
3v9l NADDelta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial 1.2.1.88 0.667
3zqa NDPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.666
4i8p NADAminoaldehyde dehydrogenase 1 / 0.662
1ez0 NAPNADP-dependent fatty aldehyde dehydrogenase 1.2.1.4 0.657
2wme NAPNAD/NADP-dependent betaine aldehyde dehydrogenase / 0.653