sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 1.357 | |
| 4u9v | ACO | N-alpha-acetyltransferase 40 | 2.3.1 | 0.836 | |
| 1tiq | COA | Spermidine/spermine N(1)-acetyltransferase | / | 0.831 | |
| 4jwp | ACO | GCN5-related N-acetyltransferase | / | 0.756 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.753 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.749 | |
| 1b87 | ACO | Aac(6')-Ii protein | / | 0.743 | |
| 3vwd | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.736 | |
| 4b5o | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.735 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.726 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.723 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.721 | |
| 3k9u | ACO | Spermidine N(1)-acetyltransferase | / | 0.718 | |
| 3zj0 | ACO | Putative acetyltransferase OgpAT | / | 0.716 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.715 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.715 | |
| 2cy2 | ACO | Probable acetyltransferase | / | 0.714 | |
| 4u9y | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.714 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.713 | |
| 3f0a | ACO | Spermidine N(1)-acetyltransferase | / | 0.712 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.710 | |
| 5kf2 | COA | Predicted acetyltransferase | / | 0.710 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.709 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.709 | |
| 4hkf | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.707 | |
| 3to6 | LYS_CMC | Histone acetyltransferase ESA1 | / | 0.704 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.704 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.703 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.702 | |
| 2cnt | COA | Ribosomal-protein-alanine acetyltransferase | / | 0.700 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.698 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.696 | |
| 2ob0 | ACO | N-alpha-acetyltransferase 50 | / | 0.696 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.695 | |
| 2bsw | CAO | Probable acetyltransferase | / | 0.693 | |
| 4cgp | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.693 | |
| 2bei | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.692 | |
| 2jdc | CAO | Probable acetyltransferase | / | 0.689 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.688 | |
| 2rc4 | ACO | Histone acetyltransferase KAT6A | / | 0.688 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.686 | |
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.684 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.683 | |
| 4ucn | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.681 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.678 | |
| 2ge3 | ACO | Probable acetyltransferase | / | 0.677 | |
| 1z4r | ACO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.676 | |
| 5kf8 | COA | Predicted acetyltransferase | / | 0.676 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.674 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.674 | |
| 1qsr | ACO | HAT A1 | / | 0.673 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.673 | |
| 4xnh | ACO | N-terminal acetyltransferase A complex subunit NAT5 | 2.3.1 | 0.673 | |
| 2fiw | ACO | GCN5-related N-acetyltransferase:Aminotransferase, class-II | / | 0.671 | |
| 2vxk | COA | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.671 | |
| 2q4v | ACO | Diamine acetyltransferase 2 | 2.3.1.57 | 0.669 | |
| 4crz | ACO | PanD regulatory factor | / | 0.669 | |
| 4jxr | ACO | Acetyltransferase | / | 0.669 | |
| 2ft0 | ACO | dTDP-fucosamine acetyltransferase | / | 0.668 | |
| 3s6f | COA | Uncharacterized protein | / | 0.666 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.666 | |
| 1pua | COA | HAT A1 | / | 0.665 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.665 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.665 | |
| 2vez | ACO | Glucosamine 6-phosphate acetyltransferase, putative | / | 0.664 | |
| 4b12 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 0.664 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.660 | |
| 4kub | COA | Uncharacterized protein | / | 0.657 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.656 | |
| 1m1d | LYX | HAT A1 | / | 0.654 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.653 | |
| 2bue | COA | AAC(6')-Ib | / | 0.652 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.652 | |
| 2prb | COA | Aminoglycoside 6-N-acetyltransferase type Ib11 | / | 0.650 |