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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rrv ATP 3-phosphoinositide-dependent protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rrv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.870
3hrf ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.812
4rqk ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.807
4xx9 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.807
4aw0 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.796
4rqv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.787
3hrc ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.778
4ct1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.734
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.717
2biy ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.697
4iaz ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.693
4wb6 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.683
3o7l ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.682
3fhi ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.675
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.673
3a7h ATPSerine/threonine-protein kinase 24 2.7.11.1 0.672
4otp ADPSerine/threonine-protein kinase RIO1 2.7.11.1 0.672
3idb ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.671
4ct2 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.671
1q24 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.670
5ack ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.670
1cdk ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.669
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.665
3fjq ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.664
4bl1 ANPMaternal embryonic leucine zipper kinase 2.7.11.1 0.664
4dh7 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
1h1w ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.662
4ux9 ANPMitogen-activated protein kinase 8 2.7.11.24 0.661
3orp AGSSerine/threonine protein kinase / 0.659
3ort AGSSerine/threonine protein kinase / 0.659
2phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.657
3ork AGSSerine/threonine protein kinase / 0.657
4ekk ANPRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.657
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
4iay ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.657
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
4xw6 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.655
4krc AGSCyclin-dependent protein kinase PHO85 2.7.11.22 0.655
2itn ANPEpidermal growth factor receptor 2.7.10.1 0.653
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
4crs AGSSerine/threonine-protein kinase N2 2.7.11.13 0.652
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
4ic7 ANPMitogen-activated protein kinase 7 2.7.11.24 0.652
4nif ANPMitogen-activated protein kinase 1 2.7.11.24 0.652
4x6r ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652