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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4oxx FMN Cindoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4oxx FMNCindoxin / 1.192
3qe2 FMNNADPH--cytochrome P450 reductase / 0.968
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.929
2bf4 FMNNADPH--cytochrome P450 reductase / 0.921
3ojx FMNNADPH--cytochrome P450 reductase / 0.916
2v5u FMNFlavodoxin / 0.908
2fcr FMNFlavodoxin / 0.904
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.888
4yao FMNNADPH--cytochrome P450 reductase / 0.882
3ojw FMNNADPH--cytochrome P450 reductase / 0.880
1yob FMNFlavodoxin 2 / 0.877
4y7c FMNNADPH--cytochrome P450 reductase / 0.875
3qfr FMNNADPH--cytochrome P450 reductase / 0.867
1amo FMNNADPH--cytochrome P450 reductase / 0.863
2bn4 FMNNADPH--cytochrome P450 reductase / 0.845
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.829
1wsb FMNFlavodoxin / 0.825
1ja0 FMNNADPH--cytochrome P450 reductase / 0.823
4bmp FMNProtein NrdI / 0.820
2fx2 FMNFlavodoxin / 0.819
1ahn FMNFlavodoxin 1 / 0.811
1ofv FMNFlavodoxin / 0.803
1j8q FMNFlavodoxin / 0.802
1c7f FMNFlavodoxin / 0.795
3esy FMNFlavodoxin / 0.795
4bmo FMNProtein NrdI / 0.795
1azl FMNFlavodoxin / 0.792
1czn FMNFlavodoxin / 0.789
1akr FMNFlavodoxin / 0.783
1j9g FMNFlavodoxin / 0.782
1xyv FMNFlavodoxin / 0.781
3esz FMNFlavodoxin / 0.781
3f6s FMNFlavodoxin / 0.777
2v5v FMNFlavodoxin / 0.774
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.774
3n3a FMNProtein NrdI / 0.769
5tgz FMNCannabinoid receptor 1 / 0.760
1aku FMNFlavodoxin / 0.759
1akw FMNFlavodoxin / 0.759
1xyy FMNFlavodoxin / 0.758
3n39 FMNProtein NrdI / 0.755
1fue FMNFlavodoxin / 0.746
1j9z FMNNADPH--cytochrome P450 reductase / 0.738
2ohj FMNType A flavoprotein FprA 1 0.734
2w5u FMNFlavodoxin / 0.732
3n3b FMNProtein NrdI / 0.732
2ohh FMNType A flavoprotein FprA 1 0.730
5xra FMNCannabinoid receptor 1 / 0.723
5xr8 FMNCannabinoid receptor 1 / 0.720
3kap FMNFlavodoxin / 0.716
4fx2 FMNFlavodoxin / 0.705
1bu5 RBFFlavodoxin / 0.698
1ych FMNNitric oxide reductase 1 0.693
2ohi FMNType A flavoprotein FprA 1 0.692
1fx1 FMNFlavodoxin / 0.689
1ycf FMNNitric oxide reductase 1 0.689
2q9u FMNA-type flavoprotein / 0.686
3f6r FMNFlavodoxin / 0.686
5fx2 FMNFlavodoxin / 0.683
1ja1 FMNNADPH--cytochrome P450 reductase / 0.682
2zfa FMNLactate oxidase / 0.680
1ycg FMNNitric oxide reductase 1 0.677
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.671
3f90 FMNFlavodoxin / 0.665
1vcf FMNIsopentenyl-diphosphate delta-isomerase / 0.660
1t5b FMNFMN-dependent NADH-azoreductase / 0.659
2mok FMNFlavodoxin 1 / 0.659
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.657
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.657
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.656
3aty FMNProstaglandin F2a synthase / 0.656
2vyx FMNDodecin / 0.655
3kaq FMNFlavodoxin / 0.655
3c3n FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.654
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.653
4u8o FDAUDP-galactopyranose mutase / 0.651