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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4n82 FMN Ribonucleotide reductase (NrdI family protein), putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 1.270
4bmo FMNProtein NrdI / 0.956
4bmp FMNProtein NrdI / 0.946
4oxx FMNCindoxin / 0.929
3n39 FMNProtein NrdI / 0.910
3n3a FMNProtein NrdI / 0.909
3n3b FMNProtein NrdI / 0.909
2bf4 FMNNADPH--cytochrome P450 reductase / 0.896
2fcr FMNFlavodoxin / 0.878
3qe2 FMNNADPH--cytochrome P450 reductase / 0.841
1c7f FMNFlavodoxin / 0.826
3f6s FMNFlavodoxin / 0.819
1azl FMNFlavodoxin / 0.818
3ojx FMNNADPH--cytochrome P450 reductase / 0.818
2bn4 FMNNADPH--cytochrome P450 reductase / 0.814
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.804
3qfr FMNNADPH--cytochrome P450 reductase / 0.802
2w5u FMNFlavodoxin / 0.799
1ahn FMNFlavodoxin 1 / 0.798
2v5v FMNFlavodoxin / 0.796
2ohj FMNType A flavoprotein FprA 1 0.787
4y7c FMNNADPH--cytochrome P450 reductase / 0.787
1akr FMNFlavodoxin / 0.785
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.785
2fx2 FMNFlavodoxin / 0.779
1wsb FMNFlavodoxin / 0.778
3esy FMNFlavodoxin / 0.778
3ojw FMNNADPH--cytochrome P450 reductase / 0.778
1xyv FMNFlavodoxin / 0.776
1j9g FMNFlavodoxin / 0.775
2v5u FMNFlavodoxin / 0.768
1aku FMNFlavodoxin / 0.767
1akw FMNFlavodoxin / 0.765
2ohh FMNType A flavoprotein FprA 1 0.756
1yob FMNFlavodoxin 2 / 0.755
5tgz FMNCannabinoid receptor 1 / 0.755
1j8q FMNFlavodoxin / 0.750
1amo FMNNADPH--cytochrome P450 reductase / 0.749
1czn FMNFlavodoxin / 0.749
4yao FMNNADPH--cytochrome P450 reductase / 0.747
1xyy FMNFlavodoxin / 0.744
3esz FMNFlavodoxin / 0.744
3f90 FMNFlavodoxin / 0.737
5xra FMNCannabinoid receptor 1 / 0.736
4j8p FMNFlavodoxin / 0.733
1ja0 FMNNADPH--cytochrome P450 reductase / 0.728
1j9z FMNNADPH--cytochrome P450 reductase / 0.722
3f6r FMNFlavodoxin / 0.718
1bu5 RBFFlavodoxin / 0.713
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.713
1ofv FMNFlavodoxin / 0.712
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.706
1ycf FMNNitric oxide reductase 1 0.702
5xr8 FMNCannabinoid receptor 1 / 0.701
3klb FMNUncharacterized protein / 0.700
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.698
5fx2 FMNFlavodoxin / 0.695
4fx2 FMNFlavodoxin / 0.690
1fx1 FMNFlavodoxin / 0.688
3e4v FMNUncharacterized protein / 0.686
2ohi FMNType A flavoprotein FprA 1 0.685
1ych FMNNitric oxide reductase 1 0.684
3kap FMNFlavodoxin / 0.682
5f12 FMNNAD(P)H dehydrogenase (quinone) / 0.681
1ja1 FMNNADPH--cytochrome P450 reductase / 0.678
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.676
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.674
1t5b FMNFMN-dependent NADH-azoreductase / 0.672
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.672
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.670
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.669
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.669
4n65 FMNFMN-dependent NADH-azoreductase 1 / 0.669
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.665
2b3d FADModulator of drug activity B / 0.665
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.665
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.664
2z9d FMNFMN-dependent NADH-azoreductase / 0.663
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.663
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.662
2reh FADNitroalkane oxidase 1.7.3.1 0.661
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.660
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.658
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.657
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.655
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.655
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.654
3tjl FMNNADPH dehydrogenase / 0.654
4df2 FMNNADPH dehydrogenase / 0.654
2q9u FMNA-type flavoprotein / 0.653
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.650
2r97 FMNNAD(P)H dehydrogenase (quinone) / 0.650