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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4mv4 ACP Biotin carboxylase 6.3.4.14

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4mv4 ACPBiotin carboxylase 6.3.4.14 0.820
4mv3 ACPBiotin carboxylase 6.3.4.14 0.711
2w6z L21Biotin carboxylase 6.3.4.14 0.706
4mv1 ADPBiotin carboxylase 6.3.4.14 0.706
4zme ADNMyosin heavy chain kinase A 2.7.11.7 0.691
3ac1 KZITyrosine-protein kinase Lck 2.7.10.2 0.676
2r86 ATP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.675
4dt8 ADNAPH(2'')-Id / 0.669
4gt3 ATPMitogen-activated protein kinase 1 2.7.11.24 0.665
3lct ADPALK tyrosine kinase receptor 2.7.10.1 0.662
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.655
4fic 0ULProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.653
2w71 L23Biotin carboxylase 6.3.4.14 0.652
3tin ADPTtl protein / 0.650