scPDB - 3tin entry

Protein Data Bank Entry:

PDB ID : 3tin

Resolution :2.900 Å

Experimental Method : X-ray

Deposition Date : 2011-08-20

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Ttl protein
ID:	A9ULH4_XENTR
AC:	A9ULH4
Organism:	Xenopus tropicalis
Reign:	Eukaryota
TaxID:	8364
EC Number:	/

Chains:

Chain Name:	Percentage of Residues within binding site
A	100 %

Ligand binding site composition:

B-Factor:	77.213
Number of residues:	21
Including
Standard Amino Acids:	21
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.101	533.250

% Hydrophobic	% Polar
58.86	41.14
According to VolSite

Ligand :

HET Code:	ADP
Formula:	C10H12N5O10P2
Molecular weight:	424.177 g/mol
DrugBank ID:	-
Buried Surface Area:	34.42 %
Polar Surface area:	260.7 Å2

Number of
H-Bond Acceptors:	14
H-Bond Donors:	3
Rings:	3
Aromatic rings:	2
Anionic atoms:	3
Cationic atoms:	0
Rule of Five Violation:	1
Rotatable Bonds:	6

Mass center Coordinates

X	Y	Z
20.4727	2.20556	17.7201

Binding mode :

What is Poseview ?

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Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
O1B	NZ	LYS- 74	3.96	0	Ionic (Protein Cationic)	false
O1A	NZ	LYS- 150	3.81	0	Ionic (Protein Cationic)	false
N6	OE1	GLN- 183	3	144.7	H-Bond (Ligand Donor)	false
N6	O	LYS- 184	3.24	153.63	H-Bond (Ligand Donor)	false
N1	N	LEU- 186	3.02	161.2	H-Bond (Protein Donor)	false
O3'	OD2	ASP- 200	2.79	147.67	H-Bond (Ligand Donor)	false
C2'	SD	MET- 320	3.84	0	Hydrophobic	false
C2'	CD1	ILE- 330	4.39	0	Hydrophobic	false