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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kto FAD Putative isovaleryl-CoA dehydrogenase protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kto FADPutative isovaleryl-CoA dehydrogenase protein / 1.167
2pg0 FADAcyl-CoA dehydrogenase / 0.801
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.773
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.754
3nf4 FADAcyl-CoA dehydrogenase domain-containing protein / 0.754
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.751
5ahs FADAcyl-CoA dehydrogenase / 0.751
5af7 FADAcyl-CoA dehydrogenase / 0.750
1siq FADGlutaryl-CoA dehydrogenase, mitochondrial 1.3.8.6 0.747
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.729
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.729
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.723
1t9g FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.721
3owa FADAcyl-CoA dehydrogenase / 0.711
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.709
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.707
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.703
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.689
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.686
4irn FADAnaB / 0.686
2c3c FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.685
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.675
2wzv FMNNitroreductase NfnB / 0.674
2a1t FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.672
1ege FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.670
1eje FMNProtein MTH_152 / 0.666
3r7k FDAProbable acyl CoA dehydrogenase / 0.662
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.661
4m9a FDAAcyl-CoA dehydrogenase / 0.661
5jsc FADPutative acyl-CoA dehydrogenase / 0.661
2bkj FMNNADPH-flavin oxidoreductase / 0.660
3ept FDAPutative FAD-monooxygenase / 0.657
5dkk FMNPredicted protein / 0.656
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.655
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.653
1x31 FMNSubunit alpha of sarocosine oxidase / 0.653
1x31 FMNSubunit beta of sarcosine oxidase / 0.653
4yco FMNtRNA-dihydrouridine(16) synthase / 0.653
1xdi FADNAD(P)H dehydrogenase (quinone) / 0.652
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.652
3v76 FDAUncharacterized protein / 0.651
2ou5 FMNPyridoxamine 5'-phosphate oxidase-related FMN-binding protein / 0.650