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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4kap 1QV Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.950
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.761
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.759
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.748
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.747
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.746
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.744
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.742
3s8x E59Carbonic anhydrase 2 4.2.1.1 0.742
3mdz EZLCarbonic anhydrase 7 4.2.1.1 0.740
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.737
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.733
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.729
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.728
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.727
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.726
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.725
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.724
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.721
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.720
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.717
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.715
3mho J43Carbonic anhydrase 2 4.2.1.1 0.714
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.712
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.707
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.707
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.703
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.703
4ht2 V50Carbonic anhydrase 12 4.2.1.1 0.701
1okn STBCarbonic anhydrase 2 4.2.1.1 0.698
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.698
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.696
4uov AZMCarbonate dehydratase / 0.696
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.695
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.692
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.689
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.689
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.689
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.688
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.687
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.686
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.686
1i9n IOACarbonic anhydrase 2 4.2.1.1 0.683
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.683
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.682
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.681
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.680
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.679
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.679
3dd8 2C7Carbonic anhydrase 2 4.2.1.1 0.677
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.677
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.674
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 0.673
2weo FBWCarbonic anhydrase 2 4.2.1.1 0.672
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.672
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.670
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.667
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.666
1okm SABCarbonic anhydrase 2 4.2.1.1 0.666
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.665
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.664
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.663
3myq E27Carbonic anhydrase 2 4.2.1.1 0.663
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.662
3ni5 C1HCarbonic anhydrase 2 4.2.1.1 0.662
1bnn AL1Carbonic anhydrase 2 4.2.1.1 0.661
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.661
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.660
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.655
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.654
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.653
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.652
3hku TORCarbonic anhydrase 2 4.2.1.1 0.652