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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jtd NAP Voltage-gated potassium channel subunit beta-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jtd NAPVoltage-gated potassium channel subunit beta-2 / 1.473
4jtc NAPVoltage-gated potassium channel subunit beta-2 / 1.329
3lut NAPVoltage-gated potassium channel subunit beta-2 / 1.025
3lnm NAPVoltage-gated potassium channel subunit beta-2 / 1.011
2r9r NAPVoltage-gated potassium channel subunit beta-2 / 0.974
4jta NAPVoltage-gated potassium channel subunit beta-2 / 0.946
1qrq NDPVoltage-gated potassium channel subunit beta-2 / 0.926
1lqa NDPProtein tas / 0.873
2bp1 NDPAflatoxin B1 aldehyde reductase member 2 / 0.754
4aub NAPL-glyceraldehyde 3-phosphate reductase 1.1.1 0.726
1og6 NAPOxidoreductase YdhF 1 0.715
1q5m NDPProstaglandin-E(2) 9-reductase 1.1.1.189 0.715
2c91 NAPAflatoxin B1 aldehyde reductase member 2 / 0.696
1lwi NAP3-alpha-hydroxysteroid dehydrogenase 1.1.1.50 0.692
4xzn NAPAldo-keto reductase family 1 member B10 1.1.1 0.689
1hqt NAPAlcohol dehydrogenase [NADP(+)] 1.1.1.2 0.688
3q65 NAPAldose reductase 1.1.1.21 0.685
2hej NDPAldo-keto reductase family 1 member C21 1.1.1 0.678
4xo7 NAPAldo-keto reductase family 1 member C2 / 0.677
2hdj NDPAldo-keto reductase family 1 member C2 / 0.675
1r38 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.674
3o3r NAPAldose reductase-related protein 1 1.1.1.21 0.669
1ye6 NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.668
2he5 NDPAldo-keto reductase family 1 member C21 1.1.1 0.667
2clp NDPAflatoxin B1 aldehyde reductase member 3 / 0.664
1gve NAPAflatoxin B1 aldehyde reductase member 3 1 0.663
1mi3 NADNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.660
3v36 NAPAldose reductase 1.1.1.21 0.659
1k8c NAPNAD(P)H-dependent D-xylose reductase 1.1.1.307 0.658
2acq NAPAldose reductase 1.1.1.21 0.658
2pev NDPAldose reductase 1.1.1.21 0.657
2pf8 NDPAldose reductase 1.1.1.21 0.657
3q67 NAPAldose reductase 1.1.1.21 0.657
3buv NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.654
3bv7 NAP3-oxo-5-beta-steroid 4-dehydrogenase / 0.652
1ads NAPAldose reductase 1.1.1.21 0.651
2acs NAPAldose reductase 1.1.1.21 0.651
4jtq NAPAldo-keto reductase family 1 member C2 / 0.650